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13_1_40cm_scaffold_4505

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_4505_1
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(3..1931)
DNA (1929bp) protein (643aa)
ATP-dependent Clp protease, ATP-binding subunit clpA n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P066_9BACT
clpA; ATP-dependent Clp protease, ATP-binding subunit ClpA; K03694 ATP-dependent Clp protease ATP-binding subunit ClpA Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
ATP-dependent Clp protease ATP-binding protein ClpA
13_1_40cm_scaffold_4505_2
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(1947..2285)
DNA (339bp) protein (113aa)
ATP-dependent Clp protease adapter protein ClpS n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P065_9BACT
ATP-dependent Clp protease adaptor protein ClpS; K06891 ATP-dependent Clp protease adaptor protein ClpS Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
ATP-dependent Clp protease adaptor protein ClpS
13_1_40cm_scaffold_4505_3
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(2297..3022)
DNA (726bp) protein (242aa)
leucyl/phenylalanyl-tRNA/protein transferase (EC:2.3.2.6); K00684 leucyl/phenylalanyl-tRNA--protein transferase [EC:2.3.2.6] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
leucyl/phenylalanyl-tRNA/protein transferase (EC:2.3.2.6)
Leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RLX5_ACCPU
13_1_40cm_scaffold_4505_4
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3145..4743)
DNA (1599bp) protein (533aa)
DNA ligase, ATP-dependent (EC:6.5.1.1)
DNA ligase, ATP-dependent n=2 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FRD2_STIAD
ATP-dependent DNA ligase {ECO:0000313|EMBL:AKF03699.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandar
13_1_40cm_scaffold_4505_5
Myxococcus xanthus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4972..5988)
DNA (1017bp) protein (339aa)
Putative uncharacterized protein n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1CZG5_MYXXD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF89730.1}; TaxID=246197 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococ
13_1_40cm_scaffold_4505_6
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

6425..7000
DNA (576bp) protein (192aa)
putative glutamyl-tRNA synthetase; K01894 glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Putative glutamyl-tRNA synthetase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9D8_GEMAT
putative glutamyl-tRNA synthetase
13_1_40cm_scaffold_4505_7
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(7030..7281)
DNA (252bp) protein (84aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
13_1_40cm_scaffold_4505_8
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(7858..9009)
DNA (1152bp) protein (384aa)
transporter n=1 Tax=Pseudomonas sp. S9 RepID=UPI00025570FA
transport-associated Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
transporter
13_1_40cm_scaffold_4505_9
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(9511..11004)
DNA (1494bp) protein (498aa)
glycerol kinase (EC:2.7.1.30); K00864 glycerol kinase [EC:2.7.1.30] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
glpK; glycerol kinase (EC:2.7.1.30)
Glycerol kinase id=4019335 bin=GWC2_Chloroflexi_73_18 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
13_1_40cm_scaffold_4505_10
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

11161..12261
DNA (1101bp) protein (367aa)
peptidase M, neutral zinc metallopeptidase, zinc-binding site Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
Tetratricopeptide TPR_2 repeat protein id=2004475 bin=GWD2_Nitrospirae-related_57_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
hypothetical protein
13_1_40cm_scaffold_4505_11
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

13059..13937
DNA (879bp) protein (293aa)
integral membrane protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
13_1_40cm_scaffold_4505_12
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(13902..14753)
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000371D645
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
13_1_40cm_scaffold_4505_13
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14785..15876)
DNA (1092bp) protein (364aa)
Aminotransferase n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4YCA5_SORCE
aminotransferase
Aminotransferase {ECO:0000313|EMBL:AGP41986.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulos
13_1_40cm_scaffold_4505_14
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

16337..17974
DNA (1638bp) protein (546aa)
pyruvate dehydrogenase (acetyl-transferring) (EC:1.2.4.1)
Pyruvate dehydrogenase (Acetyl-transferring) {ECO:0000313|EMBL:AEN73464.1}; EC=1.2.4.1 {ECO:0000313|EMBL:AEN73464.1};; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae s
Pyruvate dehydrogenase (Acetyl-transferring) n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SJ86_RHOMR
13_1_40cm_scaffold_4505_15
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(18043..18294)
DNA (252bp) protein (84aa)
id=12557802 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
id=12557802 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_scaffold_4505_16
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(18291..19037)
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00037E9DE8
serine/threonine protein kinase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
hypothetical protein
13_1_40cm_scaffold_4505_17
Massilia sp. LC238, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19267..19800
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI0003725B2B
DSBA oxidoreductase {ECO:0000313|EMBL:KFC63354.1}; TaxID=1502852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. LC238.;"
DSBA oxidoreductase
13_1_40cm_scaffold_4505_18
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(20137..21288)
DNA (1152bp) protein (384aa)
S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1] id=12556043 bin=CNBR_ACIDO species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Adenosylhomocysteinase
13_1_40cm_scaffold_4505_19
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(21309..22253)
DNA (945bp) protein (315aa)
ArsR family transcriptional regulator; K03892 ArsR family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
ArsR family transcriptional regulator; K03892 ArsR family transcriptional regulator id=12556044 bin=CNBR_ACIDO species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Methyltransferase type 11
13_1_40cm_scaffold_4505_20
unknown

Not on your lists

comp(22654..23133)
DNA (480bp) protein (160aa)

This feature has no annotations

13_1_40cm_scaffold_4505_21
unknown

Not on your lists

23215..23868
DNA (654bp) protein (218aa)

This feature has no annotations

13_1_40cm_scaffold_4505_22
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(24455..26296)
DNA (1842bp) protein (614aa)
pepF; oligoendopeptidase F PepF; K08602 oligoendopeptidase F [EC:3.4.24.-] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
pepF; oligoendopeptidase F PepF; K08602 oligoendopeptidase F [EC:3.4.24.-] id=12554698 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
pepF; oligoendopeptidase F PepF
13_1_40cm_scaffold_4505_23
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(26343..27674)
DNA (1332bp) protein (444aa)
threonine synthase (EC:4.2.3.1)
Threonine synthase n=1 Tax=Cesiribacter andamanensis AMV16 RepID=M7N0H1_9BACT
threonine synthase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
13_1_40cm_scaffold_4505_24
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(27661..28221)
DNA (561bp) protein (187aa)
acyl-CoA hydrolase (EC:3.1.2.-); K10806 acyl-CoA thioesterase YciA [EC:3.1.2.-] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
acyl-CoA hydrolase (EC:3.1.2.-); K10806 acyl-CoA thioesterase YciA [EC:3.1.2.-] id=24451866 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
acyl-CoA hydrolase (EC:3.1.2.-)
13_1_40cm_scaffold_4505_25
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

28402..28848
DNA (447bp) protein (149aa)
arginine decarboxylase (EC:4.1.1.19); K01585 arginine decarboxylase [EC:4.1.1.19] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
arginine decarboxylase (EC:4.1.1.19); K01585 arginine decarboxylase [EC:4.1.1.19] id=12554411 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
arginine decarboxylase (EC:4.1.1.19)
Displaying 25 items

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