ggKbase home page

13_1_40cm_scaffold_503

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_503_1
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..231)
DNA (231bp) protein (77aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00031FBBB7
pydA; PydA
PydA {ECO:0000313|EMBL:CCB63417.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
13_1_40cm_scaffold_503_2
Amorphus coralli, Amorphus, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(231..575)
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000381661B
13_1_40cm_scaffold_503_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

731..1957
DNA (1227bp) protein (409aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14626658 bin=bin7_NC10_sister species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_503_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1977..4298
DNA (2322bp) protein (774aa)
carbon monoxide dehydrogenase large chain (COdehydrogenase subunit L) (CO-DH L) (EC:1.2.99.2) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
carbon monoxide dehydrogenase large chain (COdehydrogenase subunit L) (CO-DH L) (EC:1.2.99.2)
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein id=4122809 bin=GWC2_Methylomirabilis_70_16 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_503_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4309..5931
DNA (1623bp) protein (541aa)
formate-tetrahydrofolate ligase; K01938 formate--tetrahydrofolate ligase [EC:6.3.4.3] Tax=GWA2_Rokubacteria_73_35_curated
Formate--tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HML2_9FIRM
13_1_40cm_scaffold_503_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

5979..6191
DNA (213bp) protein (71aa)
Ribonuclease Z (EC:3.1.26.11); K00784 ribonuclease Z [EC:3.1.26.11] Tax=GWA2_Rokubacteria_70_23_curated
Ribonuclease Z id=4017070 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_scaffold_503_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6196..6576
DNA (381bp) protein (127aa)
multi-sensor hybrid histidine kinase (EC:2.7.13.3) Tax=GWA2_Rokubacteria_73_35_curated
multi-sensor hybrid histidine kinase (EC:2.7.13.3)
Multi-sensor hybrid histidine kinase id=4699813 bin=GWA2_Methylomirabilis_73_35 species=Beijerinckia indica genus=Beijerinckia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_503_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6573..7214
DNA (642bp) protein (214aa)
Response regulator receiver protein n=1 Tax=uncultured bacterium RepID=K1XP84_9BACT
response regulator receiver protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
response regulator receiver protein
13_1_40cm_scaffold_503_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7211..7909
DNA (699bp) protein (233aa)
Pirin domain protein n=1 Tax=Chroococcidiopsis thermalis PCC 7203 RepID=K9U1G3_9CYAN
pirin; K06911 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Pirin domain-containing protein
13_1_40cm_scaffold_503_10
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

comp(7985..8710)
DNA (726bp) protein (242aa)
phosphotransferase domain-containing protein; K07053 Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
PHP domain protein id=3663594 bin=GWF2_Lentisphaerae_49_21 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
phosphotransferase domain-containing protein
13_1_40cm_scaffold_503_11
unknown

Not on your lists

comp(8715..9026)
DNA (312bp) protein (104aa)

This feature has no annotations

13_1_40cm_scaffold_503_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9367..10425
DNA (1059bp) protein (353aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Patatin id=4226283 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_503_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10422..11630)
DNA (1209bp) protein (403aa)
Sugar phosphate permease n=1 Tax=Burkholderia sp. BT03 RepID=J2H0Y3_9BURK
major facilitator superfamily protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
major facilitator superfamily protein
13_1_40cm_scaffold_503_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11638..12831)
DNA (1194bp) protein (398aa)
alpha-methylacyl-CoA racemase (EC:5.1.99.4) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
L-carnitine dehydratase/bile acid-inducible protein F id=4169030 bin=GWC2_Methylomirabilis_70_16 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
carnitine dehydratase
13_1_40cm_scaffold_503_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12854..14218)
DNA (1365bp) protein (455aa)
MmgE/PrpD family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4187612 bin=GWC2_Methylomirabilis_70_24 species=Burkholderia xenovorans genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
MmgE/PrpD family protein
13_1_40cm_scaffold_503_16
Paenibacillus sp. HGF5, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14285..14947
DNA (663bp) protein (221aa)
PAP2 family protein n=1 Tax=Paenibacillus sp. HGF5 RepID=F3M436_9BACL
PAP2 family protein {ECO:0000313|EMBL:EGG37869.1}; TaxID=908341 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. HGF5.;"
phosphoesterase PA-phosphatase-like protein
13_1_40cm_scaffold_503_17
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14901..15620)
DNA (720bp) protein (240aa)
amidohydrolase 2 Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
Amidohydrolase 2 id=3780588 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Cyanothece taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amidohydrolase 2
13_1_40cm_scaffold_503_18
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15632..16063)
DNA (432bp) protein (144aa)
amidohydrolase 2 Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
Amidohydrolase 2 id=3780588 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Cyanothece taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_503_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16112..16828)
DNA (717bp) protein (239aa)
beta-lactamase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Beta-lactamase family protein id=5015982 bin=GWA2_Methylomirabilis_73_35 species=Thiomicrospira crunogena genus=Thiomicrospira taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_503_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16934..18097
DNA (1164bp) protein (388aa)
fadE; acyl-CoA dehydrogenase (EC:1.3.99.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Acyl-CoA dehydrogenase id=5015980 bin=GWA2_Methylomirabilis_73_35 species=Streptomyces sp. e14 genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_503_21
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18064..19299
DNA (1236bp) protein (412aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Rhizobium sp. CF080 RepID=J3CG10_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUB96798.1}; Flags: Precursor;; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group
Extracellular ligand-binding receptor
Displaying 21 items

View Taxonomy