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13_1_40cm_scaffold_5242

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_5242_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3..254
DNA (252bp) protein (84aa)
hypothetical protein
Luciferase-like, subgroup Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Luciferase family protein id=2773064 bin=GWA2_Methylomirabilis_73_35 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_5242_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

340..1401
DNA (1062bp) protein (354aa)
Putative uncharacterized protein id=2773068 bin=GWA2_Methylomirabilis_73_35 species=Planctomyces maris genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dihydroorotate dehydrogenase Tax=GWA2_Rokubacteria_73_35_curated
dihydroorotate dehydrogenase
13_1_40cm_scaffold_5242_3
unknown

Not on your lists

2388..2645
DNA (258bp) protein (86aa)

This feature has no annotations

13_1_40cm_scaffold_5242_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2623..3393)
DNA (771bp) protein (257aa)
ABC transporter-like protein; K02049 NitT/TauT family transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ABC transporter-like protein id=2817364 bin=GWC2_Methylomirabilis_70_16 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC transporter-like protein
13_1_40cm_scaffold_5242_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3390..4391)
DNA (1002bp) protein (334aa)
membrane lipoprotein lipid attachment site; K02051 NitT/TauT family transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Membrane lipoprotein lipid attachment site id=2817368 bin=GWC2_Methylomirabilis_70_16 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
membrane lipoprotein lipid attachment site
13_1_40cm_scaffold_5242_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4411..5172)
DNA (762bp) protein (254aa)
hypothetical protein; K02050 NitT/TauT family transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Abc transporter permease protein id=4165886 bin=GWF2_Methylomirabilis_70_14 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport systems inner membrane component
13_1_40cm_scaffold_5242_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5215..6204
DNA (990bp) protein (330aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=2817611 bin=GWC2_Methylomirabilis_70_16 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative CgeB family protein
13_1_40cm_scaffold_5242_8
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

6362..6823
DNA (462bp) protein (154aa)
DNA-3-methyladenine glycosylase; K03652 DNA-3-methyladenine glycosylase [EC:3.2.2.21] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative 3-methyladenine DNA glycosylase id=2773084 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA-3-methyladenine glycosylase
13_1_40cm_scaffold_5242_9
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

6976..7359
DNA (384bp) protein (128aa)
transport-associated Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
13_1_40cm_scaffold_5242_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7350..8135)
DNA (786bp) protein (262aa)
beta-lactamase domain-containing protein; K00784 ribonuclease Z [EC:3.1.26.11] Tax=GWA2_Rokubacteria_73_35_curated
Beta-lactamase domain protein id=4412540 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
beta-lactamase domain-containing protein
13_1_40cm_scaffold_5242_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8132..8593)
DNA (462bp) protein (154aa)
hypothetical protein id=2773093 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_5242_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9500..9631
DNA (132bp) protein (44aa)
tolQ; TolQ protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
tolQ protein; K03562 biopolymer transport protein TolQ id=14626725 bin=bin7_NC10_sister species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_5242_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9621..10052
DNA (432bp) protein (144aa)
tolR; protein TolR; K03560 biopolymer transport protein TolR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
tolR; protein TolR; K03560 biopolymer transport protein TolR id=14626726 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
exbD; Biopolymer transport protein exbD
13_1_40cm_scaffold_5242_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10054..10917
DNA (864bp) protein (288aa)
putative periplasmic protein TonB; K03832 periplasmic protein TonB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
TonB family protein id=4034141 bin=GWA2_Methylomirabilis_73_35 species=Synechococcus sp. genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_5242_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10921..12261
DNA (1341bp) protein (447aa)
tolB protein; K03641 TolB protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
WD40 domain-containing protein; K03641 TolB protein id=14626728 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
biopolymer transport periplasmic beta-propeller repeat protein, TolB-related
13_1_40cm_scaffold_5242_16
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

12316..12912
DNA (597bp) protein (199aa)
OmpA/MotB domain protein id=4034147 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
OmpA/MotB domain protein Tax=CSP1_6_Rokubacteria
pal; peptidoglycan-associated lipoprotein pal
13_1_40cm_scaffold_5242_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13291..13743
DNA (453bp) protein (151aa)
Uncharacterized protein id=4034149 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_5242_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13744..14235)
DNA (492bp) protein (164aa)
hypothetical protein id=4034151 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_5242_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14241..14915
DNA (675bp) protein (225aa)
Alpha/beta hydrolase family protein id=4034153 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alpha/beta hydrolase Tax=GWA2_Rokubacteria_73_35_curated
alpha/beta hydrolase
13_1_40cm_scaffold_5242_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14922..15548)
DNA (627bp) protein (209aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14626734 bin=bin7_NC10_sister species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_5242_21
Spirochaeta thermophila, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(15609..17213)
DNA (1605bp) protein (535aa)
Uncharacterized protein n=1 Tax=Spirochaeta thermophila (strain ATCC 49972 / DSM 6192 / RI 19.B1) RepID=E0RN32_SPITD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADN02501.1}; TaxID=665571 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta thermophila (strain ATCC 49972
13_1_40cm_scaffold_5242_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17215..17733)
DNA (519bp) protein (173aa)
phosphonopyruvate decarboxylase (EC:4.1.1.82) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
comE; sulfopyruvate decarboxylase subunit beta (EC:4.1.1.79)
Phosphoenolpyruvate mutase id=4268408 bin=GWA2_Methylomirabilis_73_35 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying 22 items

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