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13_1_40cm_scaffold_5705

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_5705_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2..460
DNA (459bp) protein (153aa)
Putative F420-dependent dehydrogenase id=1890912 bin=GWA2_Methylomirabilis_73_35 species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative oxidoreductase Tax=GWA2_Rokubacteria_73_35_curated
putative oxidoreductase
13_1_40cm_scaffold_5705_2
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(500..1501)
DNA (1002bp) protein (334aa)
threonine dehydratase (EC:4.3.1.19); K01754 threonine dehydratase [EC:4.3.1.19] id=14626116 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
threonine dehydratase (EC:4.3.1.19); K01754 threonine dehydratase [EC:4.3.1.19] Tax=CSP1_6_Rokubacteria
threonine dehydratase (EC:4.3.1.19)
13_1_40cm_scaffold_5705_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1536..2498
DNA (963bp) protein (321aa)
putative signal peptide peptidase SppA (EC:3.4.21.-); K04773 protease IV [EC:3.4.21.-] Tax=GWA2_Rokubacteria_73_35_curated
putative signal peptide peptidase SppA (EC:3.4.21.-)
Putative Signal peptide peptidase SppA id=3526411 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_5705_4
BJP_IG2069_Chloroflexi_70_12, Chloroflexi, Bacteria

Not on your lists

comp(2480..2674)
DNA (195bp) protein (65aa)
hypothetical protein id=24596142 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Catenulispora acidiphila genus=Catenulispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=BJP_IG2069_Chloroflexi_70_12
13_1_40cm_scaffold_5705_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2671..3246)
DNA (576bp) protein (192aa)
Coenzyme A pyrophosphatase id=1890929 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
coenzyme A pyrophosphatase Tax=GWA2_Rokubacteria_73_35_curated
coenzyme A pyrophosphatase
13_1_40cm_scaffold_5705_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3275..4060)
DNA (786bp) protein (262aa)
oxidoreductase (EC:1.-.-.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative oxidoreductase id=1890936 bin=GWA2_Methylomirabilis_73_35 species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short chain dehydrogenase family protein
13_1_40cm_scaffold_5705_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4103..4864)
DNA (762bp) protein (254aa)
sir2 family protein; K12410 NAD-dependent deacetylase [EC:3.5.1.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
sat:SYN_01020 Sir2 family NAD-dependent deacetylase; K12410 NAD-dependent deacetylase [EC:3.5.1.-] id=1241516 bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
sir2 family protein
13_1_40cm_scaffold_5705_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4922..5530)
DNA (609bp) protein (203aa)
abortive infection protein; K07052 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Abortive infection protein id=1890947 bin=GWA2_Methylomirabilis_73_35 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
abortive infection protein
13_1_40cm_scaffold_5705_9
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(5632..7059)
DNA (1428bp) protein (476aa)
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=GWC2_Rokubacteria_70_16_curated
Amidase id=3014927 bin=GWC2_Methylomirabilis_70_16 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amidase
13_1_40cm_scaffold_5705_10
unknown

Not on your lists

comp(7052..7204)
DNA (153bp) protein (51aa)

This feature has no annotations

13_1_40cm_scaffold_5705_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7223..8068)
DNA (846bp) protein (282aa)
rluD_3; ribosomal large subunit pseudouridine synthase D; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Ribosomal large subunit pseudouridine synthase D (EC:4.2.1.70)
RNA pseudouridylate synthase id=1890952 bin=GWA2_Methylomirabilis_73_35 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_5705_12
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8170..8949
DNA (780bp) protein (260aa)
two-component hybrid histidine kinase (EC:2.7.3.-)
Putative PAS/PAC sensor protein n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XQ40_9BACT
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
13_1_40cm_scaffold_5705_13
unknown

Not on your lists

9085..9285
DNA (201bp) protein (67aa)

This feature has no annotations

13_1_40cm_scaffold_5705_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9472..9888
DNA (417bp) protein (139aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=4020045 bin=GWA2_Methylomirabilis_73_35 species=Streptomyces himastatinicus genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Fis family transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
chemotaxis protein CheY
13_1_40cm_scaffold_5705_15
unknown

Not on your lists

comp(10326..10913)
DNA (588bp) protein (196aa)

This feature has no annotations

13_1_40cm_scaffold_5705_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11002..12390
DNA (1389bp) protein (463aa)
putative penicillin-binding protein 1B (EC:2.4.1.129 3.4.-.-); K05365 penicillin-binding protein 1B [EC:2.4.1.129 3.4.-.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Penicillin-binding protein, 1A family id=3640482 bin=GWC2_Proteo_65_14_Ab886 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
1A family penicillin-binding protein
13_1_40cm_scaffold_5705_17
unknown

Not on your lists

12602..12928
DNA (327bp) protein (109aa)

This feature has no annotations

13_1_40cm_scaffold_5705_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

12944..13165
DNA (222bp) protein (74aa)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_scaffold_5705_19
CSP1_5_NC10, NC10, Bacteria

Not on your lists

13162..14667
DNA (1506bp) protein (502aa)
acetoacetate metabolism regulatory protein AtoC n=1 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00036C7B55
response regulator in two-component regulatory system, sigma 54-dependent Tax=CSP1_5_NC10
response regulator in two-component regulatory system, sigma 54-dependent
13_1_40cm_scaffold_5705_20
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

14673..16493
DNA (1821bp) protein (607aa)
Multi-sensor signal transduction histidine kinase (EC:2.7.3.-)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidat
hypothetical protein n=1 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00037CDC52
13_1_40cm_scaffold_5705_21
unknown

Not on your lists

comp(16748..16972)
DNA (225bp) protein (75aa)

This feature has no annotations

Displaying 21 items

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