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13_1_40cm_scaffold_760

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_760_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(1..789)
DNA (789bp) protein (263aa)
2-oxoacid ferredoxin oxidoreductase; K04090 indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Indolepyruvate ferredoxin oxidoreductase id=3986305 bin=GWA2_Methylomirabilis_73_35 species=Streptosporangium roseum genus=Streptosporangium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
2-oxoacid ferredoxin oxidoreductase
13_1_40cm_scaffold_760_2
Streptomyces clavuligerus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

872..1297
DNA (426bp) protein (142aa)
Acetyltransferase n=1 Tax=Streptomyces clavuligerus (strain ATCC 27064 / DSM 738 / JCM 4710 / NBRC 13307 / NCIMB 12785 / NRRL 3585 / VKM Ac-602) RepID=E2Q9J1_STRC2
Acetyltransferase {ECO:0000313|EMBL:EFG05611.1}; TaxID=443255 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces clavuligerus (strain ATCC 270
acetyltransferase
13_1_40cm_scaffold_760_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1294..1686)
DNA (393bp) protein (131aa)
nuclease; K01174 micrococcal nuclease [EC:3.1.31.1] Tax=GWA2_Rokubacteria_73_35_curated
Thermonuclease id=3986306 bin=GWA2_Methylomirabilis_73_35 species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
micrococcal nuclease-like protein
13_1_40cm_scaffold_760_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1932..2180)
DNA (249bp) protein (83aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=3986308 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_760_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2213..2725)
DNA (513bp) protein (171aa)
Putative uncharacterized protein id=3986310 bin=GWA2_Methylomirabilis_73_35 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein; K06962 Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_760_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2988..4655
DNA (1668bp) protein (556aa)
gamma-glutamyltransferase 2 (EC:2.3.2.2) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Gamma-glutamyltransferase id=2558577 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gamma-glutamyltranspeptidase
13_1_40cm_scaffold_760_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4800..5240)
DNA (441bp) protein (147aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=2558561 bin=GWA2_Methylomirabilis_73_35 species=Hydrocarboniphaga effusa genus=Hydrocarboniphaga taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_760_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5195..5929)
DNA (735bp) protein (245aa)
Uncharacterized protein id=2558561 bin=GWA2_Methylomirabilis_73_35 species=Hydrocarboniphaga effusa genus=Hydrocarboniphaga taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_760_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5969..6508
DNA (540bp) protein (180aa)
putative peptidase M1, membrane alanine aminopeptidase (EC:3.4.11.2) Tax=GWA2_Rokubacteria_73_35_curated
putative peptidase M1, membrane alanine aminopeptidase (EC:3.4.11.2)
Putative Peptidase M1, membrane alanine aminopeptidase id=2558355 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_760_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6505..8502
DNA (1998bp) protein (666aa)
putative peptidase M1, membrane alanine aminopeptidase (EC:3.4.11.2) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative peptidase M1, membrane alanine aminopeptidase (EC:3.4.11.2)
Putative Peptidase M1, membrane alanine aminopeptidase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PA72_9BACT
13_1_40cm_scaffold_760_11
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

8510..9040
DNA (531bp) protein (177aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
hypothetical protein id=14627061 bin=bin7_NC10_sister species=Limnohabitans sp. Rim28 genus=Limnohabitans taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_760_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9099..9488)
DNA (390bp) protein (130aa)
Putative fluoride ion transporter CrcB n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HGD5_ANADF
camphor resistance protein CrcB; K06199 CrcB protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
camphor resistance protein CrcB
13_1_40cm_scaffold_760_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9531..10202)
DNA (672bp) protein (224aa)
hypothetical protein
Putative uncharacterized protein id=3870875 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Putative uncharacterized protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_760_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10262..12217
DNA (1956bp) protein (652aa)
peptidase S1 and S6, chymotrypsin/Hap Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Peptidase S1 and S6, chymotrypsin/Hap id=3870880 bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus mucilaginosus genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptidase S1 and S6, chymotrypsin/Hap
13_1_40cm_scaffold_760_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12210..13433)
DNA (1224bp) protein (408aa)
Predicted acyl-CoA transferase/carnitine dehydratase id=3870908 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
L-carnitine dehydratase/bile acid-inducible protein F Tax=GWA2_Rokubacteria_73_35_curated
L-carnitine dehydratase/bile acid-inducible protein F
13_1_40cm_scaffold_760_16
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

13506..14480
DNA (975bp) protein (325aa)
NADPH:quinone reductase (EC:1.6.5.5)
NADPH:quinone reductase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CQ37_PSEUX
alcohol dehydrogenase, zinccontaining, putative Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
13_1_40cm_scaffold_760_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14477..14908
DNA (432bp) protein (144aa)
deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23); K01520 dUTP pyrophosphatase [EC:3.6.1.23] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase id=3870909 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_760_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15159..17297)
DNA (2139bp) protein (713aa)
guanylate cyclase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative transmembrane sensor domain protein id=2227968 bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio magneticus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative transmembrane sensor domain protein
13_1_40cm_scaffold_760_19
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

17397..17705
DNA (309bp) protein (103aa)
id=3523877 Tax=GWA2_Rokubacteria_70_23_curated
13_1_40cm_scaffold_760_20
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(17710..17823)
DNA (114bp) protein (38aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
13_1_40cm_scaffold_760_21
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18026..19351
DNA (1326bp) protein (442aa)
hypothetical protein; K02027 multiple sugar transport system substrate-binding protein Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
Putative uncharacterized protein id=2259308 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sugar ABC transporter substrate-binding protein
13_1_40cm_scaffold_760_22
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19348..19668)
DNA (321bp) protein (107aa)
tungstate ABC transporter permease; K05772 tungstate transport system substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
ABC-type tungstate transport system permease component-like protein id=2315320 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
TupB; ABC-type tungstate transport system, permease component
13_1_40cm_scaffold_760_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(19620..20120)
DNA (501bp) protein (167aa)
ABC-type tungstate transport system permease component-like protein id=2315320 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC-type tungstate transport system permease component-like protein Tax=GWA2_Rokubacteria_73_35_curated
ABC-type tungstate transport system permease component-like protein
13_1_40cm_scaffold_760_24
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(20547..22178)
DNA (1632bp) protein (544aa)
Exported protein id=3824568 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_1_40cm_scaffold_760_25
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

22269..24596
DNA (2328bp) protein (776aa)
Uncharacterized protein id=3824567 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Uncharacterized protein Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_scaffold_760_26
unknown

Not on your lists

24927..25136
DNA (210bp) protein (70aa)

This feature has no annotations

Displaying 26 items

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