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13_1_40cm_scaffold_800

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_800_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3..140)
DNA (138bp) protein (46aa)
hypothetical protein; K01622 fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_scaffold_800_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

266..1267
DNA (1002bp) protein (334aa)
Deoxyribonucleoside regulator n=1 Tax=Anoxybacillus flavithermus TNO-09.006 RepID=M5JBE4_9BACI
transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
deoR; transcriptional regulator of deoxyribonucleoside metabolism
13_1_40cm_scaffold_800_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1277..2146)
DNA (870bp) protein (290aa)
accA; acetyl-Coa carboxylase, carboxytransferase subunit alpha (EC:6.4.1.2); K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2] Tax=GWA2_Rokubacteria_73_35_curated
accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha (EC:6.4.1.2)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha id=4208299 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_800_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2130..6875)
DNA (4746bp) protein (1582aa)
dnaE; DNA polymerase III subunit alpha (EC:2.7.7.7) Tax=GWA2_Rokubacteria_73_35_curated
dnaE; DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA polymerase III, alpha subunit id=4527229 bin=GWF2_Methylomirabilis_70_14 species=Thiocapsa marina genus=Thiocapsa taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_800_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6889..8442)
DNA (1554bp) protein (518aa)
GMP synthase (EC:6.3.5.2); K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GMP synthase (EC:6.3.5.2); K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] id=14625745 bin=bin7_NC10_sister species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
guaA; GMP synthase
13_1_40cm_scaffold_800_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8453..9613)
DNA (1161bp) protein (387aa)
guaB; IMP dehydrogenase/GMP reductase; K00088 IMP dehydrogenase [EC:1.1.1.205] Tax=GWA2_Rokubacteria_73_35_curated
IMP dehydrogenase family protein id=4208294 bin=GWA2_Methylomirabilis_73_35 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
guaB; IMP dehydrogenase/GMP reductase
13_1_40cm_scaffold_800_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9728..10510)
DNA (783bp) protein (261aa)
Baf family transcriptional activator; K03525 type III pantothenate kinase [EC:2.7.1.33] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Type III pantothenate kinase id=4208293 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Baf family transcriptional activator
13_1_40cm_scaffold_800_8
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(10526..11398)
DNA (873bp) protein (291aa)
biotin--acetyl-CoA-carboxylase ligase; K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] Tax=RIFCSPLOWO2_02_FULL_Acidobacteri
Biotin operon repressor and biotin--acetyl-CoA carboxylase ligase id=4208292 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
biotin--[acetyl-CoA-carboxylase] ligase
13_1_40cm_scaffold_800_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(11382..12968)
DNA (1587bp) protein (529aa)
valS; valyl-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Valine--tRNA ligase id=4527178 bin=GWF2_Methylomirabilis_70_14 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
valyl-tRNA synthetase
13_1_40cm_scaffold_800_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12926..13963)
DNA (1038bp) protein (346aa)
valS; valyl-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
valS; valyl-tRNA synthetase ValS (EC:6.1.1.9)
Suspect SCG annotation. See neighboring gene [13_1_40cm_scaffold_800_9].
Valine--tRNA ligase id=4810688 bin=GWC2_Methylomirabilis_70_16 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_800_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13974..14993)
DNA (1020bp) protein (340aa)
Valine--tRNA ligase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Valine--tRNA ligase id=4208290 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_800_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15067..17424
DNA (2358bp) protein (786aa)
YjgP/YjgQ family permease Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative permease id=3462289 bin=GWA2_Methylomirabilis_73_35 species=Terriglobus roseus genus=Terriglobus taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_800_13
Thiorhodococcus sp. AK35, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17640..19445)
DNA (1806bp) protein (602aa)
Asparagine synthetase n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2DWV9_9GAMM
Asparagine synthetase {ECO:0000313|EMBL:EXJ13476.1}; TaxID=1249627 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus sp. A
asparagine synthase
13_1_40cm_scaffold_800_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

19557..19727
DNA (171bp) protein (57aa)
phospholipid-lipopolysaccharide ABC transporter; K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-] Tax=GWA2_Rokubacteria_70_23_curated
Putative ABC multidrug transport system, fused ATPase and permease domain id=4334272 bin=GWF2_Methylomirabilis_70_14 species=Azospirillum brasilense genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
multidrug ABC transporter ATPase/permease
13_1_40cm_scaffold_800_15
unknown

Not on your lists

20006..20152
DNA (147bp) protein (49aa)

This feature has no annotations

13_1_40cm_scaffold_800_16
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20183..21490
DNA (1308bp) protein (436aa)
phthalate 4,5-dioxygenase (EC:1.14.12.7)
Uncharacterized protein n=1 Tax=Alicyclobacillus acidoterrestris ATCC 49025 RepID=T0DU28_9BACL
Uncharacterized protein {ECO:0000313|EMBL:ETX09342.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
13_1_40cm_scaffold_800_17
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21487..21765
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Alicyclobacillus acidoterrestris ATCC 49025 RepID=T0CJH4_9BACL
Uncharacterized protein {ECO:0000313|EMBL:EPZ52964.1}; TaxID=1356854 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus acidoterrestr
hypothetical protein
13_1_40cm_scaffold_800_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21762..22760)
DNA (999bp) protein (333aa)
oxidoreductase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Oxidoreductase id=2247794 bin=GWA2_Methylomirabilis_73_35 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oxidoreductase
13_1_40cm_scaffold_800_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(22757..25465)
DNA (2709bp) protein (903aa)
UPF0182 protein DAMO_1249 id=3462292 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_800_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(25485..25976)
DNA (492bp) protein (164aa)
ahcY; adenosylhomocysteinase (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
adenosylhomocysteinase (EC:3.3.1.1)
Adenosylhomocysteinase id=3462296 bin=GWA2_Methylomirabilis_73_35 species=Thermovibrio ammonificans genus=Thermovibrio taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_800_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(26708..27859)
DNA (1152bp) protein (384aa)
metK; S-adenosylmethionine synthetase (EC:2.5.1.6); K00789 S-adenosylmethionine synthetase [EC:2.5.1.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
metK; methionine adenosyltransferase (EC:2.5.1.6) id=14625753 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
metK; methionine adenosyltransferase (EC:2.5.1.6)
13_1_40cm_scaffold_800_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(27928..28974)
DNA (1047bp) protein (349aa)
bifunctional phosphoglucose/phosphomannose isomerase (EC:5.3.1.8); K15916 glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
bifunctional phosphoglucose/phosphomannose isomerase (EC:5.3.1.8)
Bifunctional phosphoglucose/phosphomannose isomerase id=3879951 bin=GWA2_Methylomirabilis_73_35 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_800_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(28971..31064)
DNA (2094bp) protein (698aa)
4-alpha-glucanotransferase Tax=GWA2_Rokubacteria_73_35_curated
4-alpha-glucanotransferase id=3879949 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
4-alpha-glucanotransferase
13_1_40cm_scaffold_800_24
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(31082..31951)
DNA (870bp) protein (290aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
UPF0042 nucleotide-binding protein DAMO_1192 id=3879946 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_800_25
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(31956..32285)
DNA (330bp) protein (110aa)
sigma 54 modulation protein/ribosomal protein S30EA; K05808 putative sigma-54 modulation protein id=14625756 bin=bin7_NC10_sister species=Desulfurispora thermophila genus=Desulfurispora taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
sigma 54 modulation protein/ribosomal protein S30EA; K05808 putative sigma-54 modulation protein Tax=CSP1_6_Rokubacteria
13_1_40cm_scaffold_800_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(32320..33786)
DNA (1467bp) protein (489aa)
RNA polymerase sigma-54 factor id=3879943 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RNA polymerase sigma 54 subunit RpoN; K03092 RNA polymerase sigma-54 factor Tax=GWA2_Rokubacteria_73_35_curated
RNA polymerase sigma 54 subunit RpoN
13_1_40cm_scaffold_800_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(33807..34529)
DNA (723bp) protein (241aa)
lptB; lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily id=3879942 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lptB; lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily
13_1_40cm_scaffold_800_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(34533..35090)
DNA (558bp) protein (186aa)
lipopolysaccharide transport periplasmic protein LptA; K09774 lipopolysaccharide export system protein LptA Tax=GWA2_Rokubacteria_73_35_curated
Lipopolysaccharide transport periplasmic protein LptA id=4810649 bin=GWC2_Methylomirabilis_70_16 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
lptA; lipopolysaccharide ABC transporter periplasmic protein LptA
13_1_40cm_scaffold_800_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(35087..35641)
DNA (555bp) protein (185aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Hypothetical membrane protein id=3879938 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_800_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(35749..36729)
DNA (981bp) protein (327aa)
kpsF; arabinose 5-phosphate isomerase (EC:5.3.1.13) Tax=GWA2_Rokubacteria_73_35_curated
kpsF; arabinose 5-phosphate isomerase (EC:5.3.1.13)
Arabinose 5-phosphate isomerase id=3879936 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying items 1-30 of 32 in total

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