ggKbase home page

13_1_40cm_scaffold_806

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_806_1
unknown

Not on your lists

3..98
DNA (96bp) protein (32aa)

This feature has no annotations

13_1_40cm_scaffold_806_2
unknown

Not on your lists

125..1987
DNA (1863bp) protein (621aa)

This feature has no annotations

13_1_40cm_scaffold_806_3
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

1984..2361
DNA (378bp) protein (126aa)
Marine sediment metagenome DNA, contig: S12H4_L00878 Tax=RBG_16_Archaea_50_20_curated
13_1_40cm_scaffold_806_4
Aciduliprofundum boonei, Aciduliprofundum, Euryarchaeota, Archaea

Not on your lists

comp(2335..2550)
DNA (216bp) protein (72aa)
aminoacyl-tRNA hydrolase (EC:3.1.1.29)
Putative uncharacterized protein n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IAV8_ACIB4
Putative uncharacterized protein {ECO:0000313|EMBL:EDY36634.1}; TaxID=439481 species="Archaea; Euryarchaeota; Aciduliprofundum.;" source="Aciduliprofundum boonei (strain DSM 19572 / T469).;"
13_1_40cm_scaffold_806_5
RBG_13_Bathyarchaeota_52_12_curated, Bathyarchaeota, Archaea

Not on your lists

2764..3219
DNA (456bp) protein (152aa)
Putative uncharacterized protein PH1876 n=1 Tax=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) RepID=O59544_PYRHO
hypothetical protein Tax=RBG_13_Bathyarchaeota_52_12_curated
hypothetical protein
13_1_40cm_scaffold_806_6
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

3433..4182
DNA (750bp) protein (250aa)
psmA; proteasome subunit alpha (EC:3.4.25.1); K03432 proteasome alpha subunit [EC:3.4.25.1] Tax=RBG_16_Archaea_50_20_curated
proteasome alpha subunit (EC:3.4.25.1)
Proteasome alpha subunit n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N8Y4_9ARCH
13_1_40cm_scaffold_806_7
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


4179..4868
DNA (690bp) protein (230aa)
Putative ribosome maturation protein SDO1 n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJH0_NITGG
ribosome maturation protein SDO1 Tax=RBG_16_Archaea_50_20_curated
rRNA metabolism protein, SBDS family
13_1_40cm_scaffold_806_8
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

4877..5593
DNA (717bp) protein (239aa)
Exosome complex component Rrp4 n=1 Tax=Pyrolobus fumarii (strain DSM 11204 / 1A) RepID=G0ECM8_PYRF1
KH domain containing protein; K03679 exosome complex component RRP4 Tax=RBG_16_Archaea_50_20_curated
putative exosome complex RNA-binding protein 1
13_1_40cm_scaffold_806_9
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

5571..6338
DNA (768bp) protein (256aa)
Exosome complex component Rrp41 n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZKB6_THELI
rph; exosome complex exonuclease Rrp41; K11600 exosome complex component RRP41 Tax=RBG_16_Archaea_50_20_curated
exosome complex exonuclease Rrp41
13_1_40cm_scaffold_806_10
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

6338..7156
DNA (819bp) protein (273aa)
Exosome complex component Rrp42 n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AH19_PYRYC
exosome complex RNA-binding protein Rrp42; K12589 exosome complex component RRP42 Tax=RBG_16_Archaea_50_20_curated
exosome complex RNA-binding protein Rrp42
13_1_40cm_scaffold_806_11
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

7156..7623
DNA (468bp) protein (156aa)
50S ribosomal protein L37Ae n=1 Tax=Thermofilum sp. 1910b RepID=S5ZKQ1_9CREN
rpl37ae; 50S ribosomal protein L37Ae; K02921 large subunit ribosomal protein L37Ae Tax=RBG_16_Archaea_50_20_curated
50S ribosomal protein L37
13_1_40cm_scaffold_806_12
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

7857..8279
DNA (423bp) protein (141aa)
Prefoldin subunit beta n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ID44_NITGG
pfdB; prefoldin, subunit beta Tax=RBG_16_Archaea_50_20_curated
pfdB; prefoldin, subunit beta
13_1_40cm_scaffold_806_13
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

8362..9321
DNA (960bp) protein (320aa)
Predicted phosphoesterase, DHH family n=1 Tax=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) RepID=A2BKC6_HYPBU
DHH family phosphoesterase; K06881 phosphoesterase RecJ domain-containing protein Tax=RBG_13_Bathyarchaeota_46_16b_curated
DHH family phosphoesterase
13_1_40cm_scaffold_806_14
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

9382..10248
DNA (867bp) protein (289aa)
Cobalt/nickel ABC transporter ATP-binding protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N8Z3_9ARCH
ABC transporter; K02006 cobalt/nickel transport system ATP-binding protein Tax=RBG_16_Archaea_50_20_curated
cobalt/nickel ABC transporter ATP-binding protein
13_1_40cm_scaffold_806_15
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

10290..11087
DNA (798bp) protein (266aa)
Cobalt/nickel ABC transporter ATP-binding protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N8Z4_9ARCH
hypothetical protein Tax=RBG_16_Bathyarchaeota_48_13_curated
cobalt/nickel ABC transporter ATP-binding protein
13_1_40cm_scaffold_806_16
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

11068..11793
DNA (726bp) protein (242aa)
hypothetical protein n=2 Tax=unclassified Crenarchaeota RepID=UPI0003624E5C
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_1_40cm_scaffold_806_17
Methanosphaerula palustris, Methanosphaerula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(12257..12652)
DNA (396bp) protein (132aa)
Transcriptional regulator, HxlR family n=1 Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GG12_METPE
HxlR family transcriptional regulator
Transcriptional regulator, HxlR family {ECO:0000313|EMBL:ACL16086.1}; TaxID=521011 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanosphaerula.;" source="
13_1_40cm_scaffold_806_18
Streptomyces tsukubaensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12720..13151
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Streptomyces tsukubaensis NRRL18488 RepID=I2MYP1_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EIF89888.1}; TaxID=1114943 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces tsukubaensis NRRL18488
hypothetical protein
13_1_40cm_scaffold_806_19
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

13315..15021
DNA (1707bp) protein (569aa)
dppA; peptide ABC transporter substrate-binding protein; K02035 peptide/nickel transport system substrate-binding protein id=24578969 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Archaeoglobus fulgidus genus=Archaeoglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
dppA; peptide ABC transporter substrate-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
dppA; peptide ABC transporter substrate-binding protein
13_1_40cm_scaffold_806_20
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

15089..16129
DNA (1041bp) protein (347aa)
peptide ABC transporter permease n=1 Tax=Mastigocladopsis repens RepID=UPI0003114471
permease of oligopeptide ABC transporter; K02033 peptide/nickel transport system permease protein Tax=RBG_16_Euryarchaeota_67_27_curated
ABC-type dipeptide/oligopeptide/nickel transport system, permease component
13_1_40cm_scaffold_806_21
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

16130..17053
DNA (924bp) protein (308aa)
binding-protein-dependent transport systems inner membrane component; K02034 peptide/nickel transport system permease protein id=24578967 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermosipho melanesiensis genus=Thermosipho taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
binding-protein-dependent transport systems inner membrane component; K02034 peptide/nickel transport system permease protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
peptide ABC transporter permease
13_1_40cm_scaffold_806_22
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

17054..18010
DNA (957bp) protein (319aa)
oppD; oligopeptide ABC transporter ATP-binding protein Tax=RBG_16_Euryarchaeota_67_27_curated
oppD; oligopeptide ABC transporter ATP-binding protein id=24578966 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Actinopolymorpha alba genus=Actinopolymorpha taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
oligopeptide/dipeptide ABC transporter ATPase
13_1_40cm_scaffold_806_23
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

18007..19314
DNA (1308bp) protein (436aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057) RepID=F8K2L4_STREN
oligopeptide/dipeptide ABC transporter ATPase Tax=RBG_16_Euryarchaeota_68_13_curated
oligopeptide/dipeptide ABC transporter ATPase
13_1_40cm_scaffold_806_24
Methanobacterium formicicum, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

19514..20101
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=unclassified Crenarchaeota (miscellaneous) RepID=UPI00035E799E
peptidase M50
Peptidase M50 {ECO:0000313|EMBL:CEA13128.1}; TaxID=2162 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacterium formicic
13_1_40cm_scaffold_806_25
Pyrolobus fumarii, Pyrolobus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(20142..22076)
DNA (1935bp) protein (645aa)
Acetate/CoA ligase n=1 Tax=Pyrolobus fumarii (strain DSM 11204 / 1A) RepID=G0EEM1_PYRF1
acetate/CoA ligase
Acetate/CoA ligase {ECO:0000313|EMBL:AEM38843.1}; TaxID=694429 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Pyrodictiaceae; Pyrolobus.;" source="Pyrolobus fumarii (strain DSM 1120
13_1_40cm_scaffold_806_26
unknown

Not on your lists

22196..22645
DNA (450bp) protein (150aa)

This feature has no annotations

13_1_40cm_scaffold_806_27
Sulfolobus tokodaii, Sulfolobus, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

22776..23603
DNA (828bp) protein (276aa)
uppP; UDP pyrophosphate phosphatase (EC:3.6.1.27)
Undecaprenyl-diphosphatase {ECO:0000255|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000255|HAMAP-Rule:MF_01006};; Undecaprenyl pyrophosphate phosphatase {ECO:0000255|HAMAP-Rule:MF_01006}; TaxID=273063 spe
Undecaprenyl-diphosphatase n=1 Tax=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) RepID=UPPP_SULTO
13_1_40cm_scaffold_806_28
unknown

Not on your lists

23867..24133
DNA (267bp) protein (89aa)

This feature has no annotations

13_1_40cm_scaffold_806_29
unknown

Not on your lists

24632..25021
DNA (390bp) protein (130aa)

This feature has no annotations

13_1_40cm_scaffold_806_30
RBG_16_Bathyarchaeota_57_9_curated, Bathyarchaeota, Archaea

Not on your lists

25187..26212
DNA (1026bp) protein (342aa)
Flap endonuclease 1 n=1 Tax=Thermofilum pendens (strain Hrk 5) RepID=A1RXA5_THEPD
hypothetical protein Tax=RBG_16_Bathyarchaeota_57_9_curated
flap endonuclease-1
Displaying items 1-30 of 50 in total

View Taxonomy