ggKbase home page

13_1_40cm_scaffold_889

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_889_1
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

1..1203
DNA (1203bp) protein (401aa)
FixC; dehydrogenases; K00313 electron transfer flavoprotein-quinone oxidoreductase [EC:1.5.5.-] Tax=RBG_16_Euryarchaeota_68_13_curated
Dehydrogenases n=1 Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D1D5_PELTS
FixC; dehydrogenases
13_1_40cm_scaffold_889_2

Not on your lists

1206..1502
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=candidate division YNPFFA RepID=UPI0003722417
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (FixX) {ECO:0000313|EMBL:AIF10870.1}; TaxID=1456167 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine
4Fe-4S ferredoxin
13_1_40cm_scaffold_889_3
unknown

Not on your lists

1558..1863
DNA (306bp) protein (102aa)

This feature has no annotations

13_1_40cm_scaffold_889_4
RLO_RIF03_38_15, RIF3, Bacteria

Not on your lists

comp(1873..2856)
DNA (984bp) protein (328aa)
Electron transfer flavoprotein FAD-binding domain protein n=1 Tax=delta proteobacterium NaphS2 RepID=D8EXB5_9DELT
electron transfer flavoprotein alpha-subunit; K03522 electron transfer flavoprotein alpha subunit Tax=RIFCSPLOWO2_12_FULL_RIF03_38_15_curated
electron transfer flavoprotein subunit alpha/beta
13_1_40cm_scaffold_889_5
RLO_RIF03_38_15, RIF3, Bacteria

Not on your lists

comp(2860..3591)
DNA (732bp) protein (244aa)
electron transfer flavoprotein subunit beta Tax=RIFCSPLOWO2_12_FULL_RIF03_38_15_curated
Electron transfer flavoprotein subunit beta; K03521 electron transfer flavoprotein beta subunit id=24469727 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
electron transfer flavoprotein subunit beta
13_1_40cm_scaffold_889_6
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

3737..4024
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=unclassified candidate division pSL4 RepID=UPI00036C16EB
twin arginine-targeting protein translocase; K03116 sec-independent protein translocase protein TatA Tax=RBG_16_Archaea_50_20_curated
sec-independent protein translocase protein TatA
13_1_40cm_scaffold_889_7
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

4282..5031
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Aigarchaeota archaeon SCGC AAA471-G05 RepID=UPI00037A23C5
Sec-independent protein secretion pathway component TatC; K03118 sec-independent protein translocase protein TatC Tax=RBG_16_Archaea_50_20_curated
sec-independent protein translocase protein TatC
13_1_40cm_scaffold_889_8
Methanobacterium sp. Maddingley MBC34, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

5792..6094
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Methanobacterium sp. Maddingley MBC34 RepID=K6TWE0_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EKQ51856.1}; TaxID=1220534 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacte
hypothetical protein
13_1_40cm_scaffold_889_9
unknown

Not on your lists

6338..6649
DNA (312bp) protein (104aa)

This feature has no annotations

13_1_40cm_scaffold_889_10
RBG_16_Aminicenantes_66_30_curated, Aminicenantes, Bacteria

Not on your lists

6653..8083
DNA (1431bp) protein (477aa)
hypothetical protein id=17418201 bin=RBG_16_Aminicenantes_66_30 species=Kribbella catacumbae genus=Kribbella taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein Tax=RBG_16_Aminicenantes_66_30_curated
hypothetical protein
13_1_40cm_scaffold_889_11
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

8300..9352
DNA (1053bp) protein (351aa)
purA; adenylosuccinate synthase (EC:6.3.4.4) Tax=RBG_13_Bathyarchaeota_38_9_curated
purA; adenylosuccinate synthase (EC:6.3.4.4)
Adenylosuccinate synthetase n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6ATU0_9ARCH
13_1_40cm_scaffold_889_12
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(9293..10033)
DNA (741bp) protein (247aa)
hypothetical protein n=1 Tax=Aigarchaeota archaeon SCGC AAA471-E16 RepID=UPI000381BC1C
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
13_1_40cm_scaffold_889_13
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(10104..10781)
DNA (678bp) protein (226aa)
2-phospho-L-lactate guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_02114}; Short=LP guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_02114};; EC=2.7.7.68 {ECO:0000256|HAMAP-Rule:MF_02114};; TaxID=112989
2-phospho-L-lactate guanylyltransferase n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EGC4_9CHLR
hypothetical protein
13_1_40cm_scaffold_889_14
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(10778..11716)
DNA (939bp) protein (313aa)
LPPG:FO 2-phospho-L-lactate transferase; K11212 LPPG:FO 2-phospho-L-lactate transferase [EC:2.7.8.28] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
LPPG:FO 2-phospho-L-lactate transferase n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5USE2_ROSS1
LPPG:FO 2-phospho-L-lactate transferase
13_1_40cm_scaffold_889_15
unknown

Not on your lists

comp(11767..12162)
DNA (396bp) protein (132aa)

This feature has no annotations

13_1_40cm_scaffold_889_16
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(12179..14005)
DNA (1827bp) protein (609aa)
GlmS; glucosamine 6-phosphate synthetase; K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16] Tax=RBG_16_Archaea_50_20_curated
glucosamine--fructose-6-phosphate aminotransferase (isomerizing) (EC:2.6.1.16)
hypothetical protein n=1 Tax=Crenarchaeota archaeon SCGC AAA471-B05 RepID=UPI00036C48FC
13_1_40cm_scaffold_889_17
unknown

Not on your lists

14772..15299
DNA (528bp) protein (176aa)

This feature has no annotations

13_1_40cm_scaffold_889_18
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

15431..16093
DNA (663bp) protein (221aa)
aspartate kinase (EC:2.7.2.4); K00928 aspartate kinase [EC:2.7.2.4] Tax=RBG_16_Archaea_50_20_curated
aspartate kinase (EC:2.7.2.4)
Aspartokinase n=5 Tax=root RepID=A5ULF9_METS3
13_1_40cm_scaffold_889_19
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

16041..16727
DNA (687bp) protein (229aa)
aspartate kinase (EC:2.7.2.4); K00928 aspartate kinase [EC:2.7.2.4] Tax=RBG_13_Bathyarchaeota_38_9_curated
lysC; aspartate kinase (EC:2.7.2.4)
Aspartokinase n=1 Tax=Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg) RepID=D9PX40_METTM
13_1_40cm_scaffold_889_20
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

16729..17778
DNA (1050bp) protein (350aa)
Asd; aspartate-semialdehyde dehydrogenase (EC:1.2.1.11); K00133 aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] Tax=RBG_16_Archaea_50_20_curated
Asd; aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=Q8TVK0_METKA
13_1_40cm_scaffold_889_21
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

17813..18601
DNA (789bp) protein (263aa)
fructose bisphosphate aldolase; K01623 fructose-bisphosphate aldolase, class I [EC:4.1.2.13] Tax=RBG_16_Archaea_50_20_curated
fructose-bisphosphate aldolase (EC:4.1.2.13)
2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase n=1 Tax=Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3) RepID=Q2NHZ5_METST
13_1_40cm_scaffold_889_22
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

18564..19622
DNA (1059bp) protein (353aa)
3-dehydroquinate synthase; K11646 dehydroquinate synthase II [EC:1.4.1.-] Tax=RBG_16_Archaea_50_20_curated
aroB; 3-dehydroquinate synthase (EC:1.4.1.-)
3-dehydroquinate synthase n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8IAN9_METCZ
13_1_40cm_scaffold_889_23
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

19619..20302
DNA (684bp) protein (228aa)
aroD; 3-dehydroquinate dehydratase, type I; K03785 3-dehydroquinate dehydratase I [EC:4.2.1.10] Tax=RBG_13_Bathyarchaeota_38_9_curated
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase n=1 Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K3N1_DEHLB
13_1_40cm_scaffold_889_24
RBG_16_Chloroflexi_58_8_curated, Chloroflexi, Bacteria

Not on your lists

20309..21148
DNA (840bp) protein (280aa)
aroE; shikimate 5-dehydrogenase (EC:1.1.1.25); K00014 shikimate dehydrogenase [EC:1.1.1.25] Tax=RBG_16_Chloroflexi_58_8_curated
shikimate dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GWT7_METFV
13_1_40cm_scaffold_889_25
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

21139..22017
DNA (879bp) protein (293aa)
shikimate kinase (EC:2.7.1.71); K00891 shikimate kinase [EC:2.7.1.71] Tax=RBG_16_Archaea_50_20_curated
shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N6H8_9ARCH
13_1_40cm_scaffold_889_26
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

22200..23288
DNA (1089bp) protein (363aa)
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19); K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] Tax=RBG_16_Archaea_50_20_curated
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
Probable 3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=AROA_UNCMA
13_1_40cm_scaffold_889_27
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

23278..24378
DNA (1101bp) protein (367aa)
aroC; chorismate synthase (EC:4.2.3.5) Tax=RBG_16_Archaea_50_20_curated
chorismate synthase (EC:4.2.3.5)
Chorismate synthase n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N894_9ARCH
13_1_40cm_scaffold_889_28
Ignicoccus hospitalis, Ignicoccus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

24385..25470
DNA (1086bp) protein (362aa)
Chorismate mutase n=1 Tax=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) RepID=A8AAX2_IGNH4
chorismate mutase
Chorismate mutase {ECO:0000313|EMBL:ABU82074.1}; TaxID=453591 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Ignicoccus.;" source="Ignicoccus hospitalis (strain
13_1_40cm_scaffold_889_29
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

25646..26914
DNA (1269bp) protein (423aa)
trpE; anthranilate synthase component 1 (EC:4.1.3.27) Tax=RBG_16_Archaea_50_20_curated
trpE; anthranilate synthase component 1 (EC:4.1.3.27)
Anthranilate synthase component 1 n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBR4_NITGG
13_1_40cm_scaffold_889_30
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

26911..27489
DNA (579bp) protein (193aa)
trpG; anthranilate synthase component II (EC:4.1.3.27) Tax=RBG_16_Archaea_50_20_curated
trpG; anthranilate synthase component II (EC:4.1.3.27)
Anthranilate synthase component II n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IN19_NITGG
Displaying items 1-30 of 46 in total

View Taxonomy