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13_1_40cm_scaffold_1232

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1232_1
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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1..363
DNA (363bp) protein (121aa)
Acriflavin resistance protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IMR8_KORVE
multidrug transporter
Multidrug transporter {ECO:0000313|EMBL:AJP49154.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
13_1_40cm_scaffold_1232_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(360..1616)
DNA (1257bp) protein (419aa)
group 1 glycosyl transferase; K15521 D-inositol-3-phosphate glycosyltransferase [EC:2.4.1.250] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
putative glycosyltransferase (EC:2.4.-.-)
Putative glycosyltransferase id=4119980 bin=GWF2_Methylomirabilis_70_14 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1232_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1613..2593)
DNA (981bp) protein (327aa)
cellulose biosynthesis (CelD)-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=3960018 bin=GWA2_Methylomirabilis_73_35 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_1232_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(2683..3060)
DNA (378bp) protein (126aa)
regulatory protein, FmdB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative regulatory protein, FmdB id=4177829 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
regulatory protein, FmdB
13_1_40cm_scaffold_1232_5
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(3411..3830)
DNA (420bp) protein (140aa)
putative methyltransferase (EC:2.1.1.-) Tax=GWA2_Rokubacteria_70_23_curated
Putative Methyltransferase id=4334341 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_1232_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

3889..4776
DNA (888bp) protein (296aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
13_1_40cm_scaffold_1232_7
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(4763..5689)
DNA (927bp) protein (309aa)
Luciferase family protein id=3859443 bin=GWF2_Methylomirabilis_70_14 species=Frankia sp. genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
luciferase family protein Tax=GWA2_Rokubacteria_70_23_curated
luciferase family protein
13_1_40cm_scaffold_1232_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5686..7668)
DNA (1983bp) protein (661aa)
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase id=3960006 bin=GWA2_Methylomirabilis_73_35 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short chain dehydrogenase Tax=GWA2_Rokubacteria_73_35_curated
short chain dehydrogenase
13_1_40cm_scaffold_1232_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

7716..9380
DNA (1665bp) protein (555aa)
o-succinylbenzoate--CoA ligase (EC:6.2.1.26); K00666 fatty-acyl-CoA synthase [EC:6.2.1.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
medium-chain fatty-acid-CoA ligase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-] id=14625844 bin=bin7_NC10_sister species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
o-succinylbenzoate--CoA ligase (EC:6.2.1.26)
13_1_40cm_scaffold_1232_10
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

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9478..10755
DNA (1278bp) protein (426aa)
hypothetical protein; K02027 multiple sugar transport system substrate-binding protein Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
Putative uncharacterized protein id=2259308 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sugar ABC transporter substrate-binding protein
13_1_40cm_scaffold_1232_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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10763..11704
DNA (942bp) protein (314aa)
Binding-protein-dependent transport systems inner membrane component id=2259310 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium sp. STM 3843 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter permease
13_1_40cm_scaffold_1232_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11704..12543
DNA (840bp) protein (280aa)
binding-protein-dependent transport systems inner membrane component; K02026 multiple sugar transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Binding-protein-dependent transport systems inner membrane component id=2259312 bin=GWA2_Methylomirabilis_73_35 species=Variovorax paradoxus genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport system inner membrane protein
13_1_40cm_scaffold_1232_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12977..13654)
DNA (678bp) protein (226aa)
gltK1; protein GltK1; K10002 glutamate/aspartate transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GltK1 id=3247815 bin=GWF2_Methylomirabilis_70_14 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gltK1; protein GltK1
13_1_40cm_scaffold_1232_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13657..14370)
DNA (714bp) protein (238aa)
gltJ1; protein GltJ1; K10003 glutamate/aspartate transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GltJ1 id=2259318 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gltJ1; protein GltJ1
13_1_40cm_scaffold_1232_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(14390..15247)
DNA (858bp) protein (286aa)
gltB1; protein GltB1 (EC:1.4.1.13)
Extracellular solute-binding protein, family 3 id=4681034 bin=GWC2_Methylomirabilis_70_16 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
extracellular solute-binding protein Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_scaffold_1232_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15261..16001)
DNA (741bp) protein (247aa)
Phosphate-transporting ATPase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Phosphate-transporting ATPase id=2259322 bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio africanus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
13_1_40cm_scaffold_1232_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16001..16501)
DNA (501bp) protein (167aa)
biotin/lipoyl attachment protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Acetyl-CoA carboxylase biotin carboxylase subunit, putative id=2259324 bin=GWA2_Methylomirabilis_73_35 species=Rhodospirillum centenum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Biotin/lipoic acid binding domain protein
13_1_40cm_scaffold_1232_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16498..17892)
DNA (1395bp) protein (465aa)
accC; acetyl CoA carboxylase, biotin carboxylase subunit (EC:6.3.4.14) Tax=GWA2_Rokubacteria_73_35_curated
pyruvate carboxylase subunit A (EC:6.4.1.1)
Acetyl CoA carboxylase, biotin carboxylase subunit id=2259326 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1232_19
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

comp(17903..18685)
DNA (783bp) protein (261aa)
enoyl-CoA hydratase/carnithine racemase Tax=RBG_16_Chloroflexi_63_12_curated
enoyl-CoA hydratase/isomerase id=1247847 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
enoyl-CoA hydratase/carnithine racemase
13_1_40cm_scaffold_1232_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18839..19264)
DNA (426bp) protein (142aa)
nucleoside-diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ndk; nucleoside diphosphate kinase (EC:2.7.4.6)
Nucleoside diphosphate kinase id=4681019 bin=GWC2_Methylomirabilis_70_16 species=Acidithiobacillus caldus genus=Acidithiobacillus taxon_order=Acidithiobacillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_1232_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(19261..20133)
DNA (873bp) protein (291aa)
succinyl-CoA synthetase, alpha subunit; K01902 succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] Tax=GWA2_Rokubacteria_73_35_curated
Succinyl-CoA ligase [ADP-forming] subunit alpha id=2259377 bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
succinyl-CoA synthetase, alpha subunit
13_1_40cm_scaffold_1232_22
unknown

Not on your lists

comp(20130..20519)
DNA (390bp) protein (130aa)

This feature has no annotations

13_1_40cm_scaffold_1232_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20482..21642)
DNA (1161bp) protein (387aa)
sucC; succinyl-CoA synthetase subunit beta (EC:6.2.1.5); K01903 succinyl-CoA synthetase beta subunit [EC:6.2.1.5] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
sucC; succinyl-CoA synthetase subunit beta (EC:6.2.1.5); K01903 succinyl-CoA synthetase beta subunit [EC:6.2.1.5] id=14430255 bin=bin3_NC10 species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin3_NC10 organism_group=NC10
sucC; succinyl-CoA synthetase subunit beta (EC:6.2.1.5)
13_1_40cm_scaffold_1232_24
unknown

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comp(21680..21754)
DNA (75bp) protein (25aa)

This feature has no annotations

Displaying 24 items

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