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13_1_40cm_4_scaffold_1052

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1052_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1..216)
DNA (216bp) protein (72aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_4_scaffold_1052_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(216..875)
DNA (660bp) protein (220aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
HAD-superfamily hydrolase; K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] id=14625197 bin=bin7_NC10_sister species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
13_1_40cm_4_scaffold_1052_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(897..2198)
DNA (1302bp) protein (434aa)
hypothetical protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4505282 bin=GWF2_Methylomirabilis_70_14 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1052_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2324..3220)
DNA (897bp) protein (299aa)
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase id=5019509 bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1052_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3273..3797)
DNA (525bp) protein (175aa)
formylmethionine deformylase (EC:3.5.1.88); K01462 peptide deformylase [EC:3.5.1.88] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
peptide deformylase id=14625194 bin=bin7_NC10_sister species=Thioflavicoccus mobilis genus=Thioflavicoccus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
peptide deformylase
13_1_40cm_4_scaffold_1052_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3785..5605)
DNA (1821bp) protein (607aa)
primosomal protein N; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Primosomal protein N' id=3315413 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
primosomal protein N'
13_1_40cm_4_scaffold_1052_7
unknown

Not on your lists

comp(5602..5763)
DNA (162bp) protein (54aa)

This feature has no annotations

13_1_40cm_4_scaffold_1052_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5760..6458)
DNA (699bp) protein (233aa)
phage SPO1 DNA polymerase-like protein; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=3315415 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1052_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6465..7685)
DNA (1221bp) protein (407aa)
coaBC; coenzyme A biosynthesis bifunctional protein coaBC (EC:4.1.1.36 6.3.2.5); K13038 phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase [EC:4.1.1.36 6.3.2.5] Tax=GWA2_
coaBC; coenzyme A biosynthesis bifunctional protein coaBC (EC:4.1.1.36 6.3.2.5)
Coenzyme A biosynthesis bifunctional protein CoaBC id=3315417 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1052_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7682..7897)
DNA (216bp) protein (72aa)
DNA-directed RNA polymerase subunit omega (EC:2.7.7.6)
DNA-directed RNA polymerase subunit omega id=3315419 bin=GWA2_Methylomirabilis_73_35 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA-directed RNA polymerase subunit omega Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_1052_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7897..8511)
DNA (615bp) protein (205aa)
gmk; guanylate kinase (EC:2.7.4.8) Tax=GWA2_Rokubacteria_73_35_curated
Guanylate kinase id=3315421 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
guanylate kinase
13_1_40cm_4_scaffold_1052_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8504..8761)
DNA (258bp) protein (86aa)
UPF0296 protein GT20_2421 id=3315424 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein; K09777 hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_1052_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8787..9701)
DNA (915bp) protein (305aa)
Putative uncharacterized protein id=3315427 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_1052_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9863..10255
DNA (393bp) protein (131aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_4_scaffold_1052_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10268..14302
DNA (4035bp) protein (1345aa)
multi-sensor signal transduction histidine kinase (EC:2.7.13.3)
two-component sensor histidine kinase Tax=GWA2_Rokubacteria_73_35_curated
Multi-sensor signal transduction histidine kinase id=4558717 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1052_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14308..14697
DNA (390bp) protein (130aa)
Transcriptional regulatory protein id=4558721 bin=GWA2_Methylomirabilis_73_35 species=ACD65 genus=ACD65 taxon_order=ACD65 taxon_class=ACD65 phylum=PER tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yycF; transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
response regulator receiver protein
13_1_40cm_4_scaffold_1052_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14783..15079
DNA (297bp) protein (99aa)
winged helix family two component transcriptional regulator; K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB Tax=GWA2_Rokubacteria_73_35_curated
Two-component response regulator id=4558725 bin=GWA2_Methylomirabilis_73_35 species=ACD51 genus=ACD51 taxon_order=ACD51 taxon_class=ACD51 phylum=PER tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
response regulator receiver protein
13_1_40cm_4_scaffold_1052_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15082..16827
DNA (1746bp) protein (582aa)
Type IV-A pilus assembly ATPase PilB id=4558726 bin=GWA2_Methylomirabilis_73_35 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
GspE; pili biogenesis protein PilB-like ATPase; K02652 type IV pilus assembly protein PilB Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_1052_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16824..17393)
DNA (570bp) protein (190aa)
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10); K00762 orotate phosphoribosyltransferase [EC:2.4.2.10] Tax=GWA2_Rokubacteria_73_35_curated
Orotate phosphoribosyltransferase id=4815545 bin=GWA2_Methylomirabilis_73_35 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
orotate phosphoribosyltransferase
13_1_40cm_4_scaffold_1052_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17390..17578)
DNA (189bp) protein (63aa)
orotidine-5'-phosphate decarboxylase (EC:4.1.1.23); K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
orotidine 5'-phosphate decarboxylase (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase id=4815544 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1052_21
unknown

Not on your lists

17885..18433
DNA (549bp) protein (183aa)

This feature has no annotations

13_1_40cm_4_scaffold_1052_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18378..21584)
DNA (3207bp) protein (1069aa)
carB; carbamoyl phosphate synthase, large subunit (EC:6.3.5.5) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
carB; carbamoyl phosphate synthase, large subunit (EC:6.3.5.5) id=14625178 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
carB; carbamoyl phosphate synthase, large subunit (EC:6.3.5.5)
13_1_40cm_4_scaffold_1052_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(21615..21881)
DNA (267bp) protein (89aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=4530407 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1052_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21889..23016)
DNA (1128bp) protein (376aa)
carA; carbamoyl phosphate synthase small subunit; K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
carA; carbamoyl phosphate synthetase, glutamine amidotransferase small subunit (EC:6.3.5.5) id=14625175 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
carA; carbamoyl phosphate synthetase, glutamine amidotransferase small subunit (EC:6.3.5.5)
13_1_40cm_4_scaffold_1052_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23063..24337)
DNA (1275bp) protein (425aa)
pyrC; dihydroorotase (EC:3.5.2.3); K01465 dihydroorotase [EC:3.5.2.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pyrC; dihydroorotase (EC:3.5.2.3)
Dihydroorotase id=4530400 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1052_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(24334..25272)
DNA (939bp) protein (313aa)
pyrB; aspartate carbamoyltransferase (catalytic subunit) (EC:2.1.3.2) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
pyrB; aspartate carbamoyltransferase (catalytic subunit) (EC:2.1.3.2) id=14625173 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pyrB; aspartate carbamoyltransferase (catalytic subunit) (EC:2.1.3.2)
13_1_40cm_4_scaffold_1052_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(25274..25837)
DNA (564bp) protein (188aa)
PyrR; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase (EC:2.4.2.9); K02825 pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] Tax=RI
bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase (EC:2.4.2.9)
Bifunctional protein PyrR id=4792710 bin=GWC2_Methylomirabilis_70_16 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_1052_28
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(25926..27167)
DNA (1242bp) protein (414aa)
atzC; N-isopropylammelide isopropylaminohydrolase (EC:3.5.99.4)
Amidohydrolase id=4792716 bin=GWC2_Methylomirabilis_70_16 species=Enterococcus faecalis genus=Enterococcus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amidohydrolase family protein Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_4_scaffold_1052_29
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(27169..27363)
DNA (195bp) protein (65aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
13_1_40cm_4_scaffold_1052_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(27554..28711)
DNA (1158bp) protein (386aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=2085290 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX Tax=GWA2_Rokubacteria_73_35_curated
atoC; sigma-54-dependent transcriptional response regulator AtoC
Displaying items 1-30 of 50 in total

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