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13_1_40cm_4_scaffold_10685

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_10685_1
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

1..666
DNA (666bp) protein (222aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_40cm_4_scaffold_10685_2
unknown

Not on your lists

663..929
DNA (267bp) protein (89aa)

This feature has no annotations

13_1_40cm_4_scaffold_10685_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

1111..1923
DNA (813bp) protein (271aa)
ABC transporter substrate binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8G9_GEMAT
ABC transporter substrate-binding protein; K02016 iron complex transport system substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ABC-type transporter, periplasmic subunit
13_1_40cm_4_scaffold_10685_4
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

1920..2861
DNA (942bp) protein (314aa)
hemin ABC transporter permease n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2AD06
transmembrane ABC transporter protein,permease; K02015 iron complex transport system permease protein Tax=GWC2_Gemmatimonadetes_71_10_curated
iron ABC transporter
13_1_40cm_4_scaffold_10685_5
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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2905..3696
DNA (792bp) protein (264aa)
btuC; putative vitamin B12 transport protein BtuD; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34] Tax=GWC2_Gemmatimonadetes_71_10_curated
Putative vitamin B12 transport protein BtuD n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5M7_GEMAT
btuC; putative vitamin B12 transport protein BtuD
13_1_40cm_4_scaffold_10685_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

4282..5472
DNA (1191bp) protein (397aa)
TonB-dependent receptor
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_4_scaffold_10685_7
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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6650..7378
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABF9_GEMAT
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_40cm_4_scaffold_10685_8
Chloroflexus aurantiacus, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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7408..8214
DNA (807bp) protein (269aa)
Periplasmic binding protein n=2 Tax=Chloroflexus RepID=A9WHK1_CHLAA
periplasmic binding protein
Periplasmic binding protein {ECO:0000313|EMBL:ABY36327.1}; TaxID=324602 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chlorofl
13_1_40cm_4_scaffold_10685_9
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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8211..8990
DNA (780bp) protein (260aa)
DNA repair protein RecO n=3 Tax=Mycobacterium RepID=RECO_MYCSJ
DNA repair protein recO
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;"
13_1_40cm_4_scaffold_10685_10
CG_Syntroph_01, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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8969..10840
DNA (1872bp) protein (624aa)
translation elongation factor n=1 Tax=Thermodesulfatator atlanticus RepID=UPI0003B459BE
selB; selenocysteine-specific translation elongation factor
selenocysteine-specific protein translation elongation factor; K03833 selenocysteine-specific elongation factor Tax=CG_Syntroph_01
13_1_40cm_4_scaffold_10685_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

10951..11514
DNA (564bp) protein (188aa)
hypothetical protein
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_4_scaffold_10685_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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11511..14090
DNA (2580bp) protein (860aa)
Chaperone ClpB n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8H4_GEMAT
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
ATP-dependent chaperone ClpB
13_1_40cm_4_scaffold_10685_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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14095..14544
DNA (450bp) protein (150aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacter
CMP/dCMP deaminase zinc-binding protein
tRNA-adenosine deaminase id=1911581 bin=GWA2_OP3_53_43 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
13_1_40cm_4_scaffold_10685_14
GWB2_Desulfobacterales_56_26_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(14495..15640)
DNA (1146bp) protein (382aa)
Kynureninase id=1734527 bin=GWB2_Desulfobacterales_56_26 species=unknown genus=Amycolatopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWB2_Desulfobacterales_56_26 organism_group=Deltaproteobacteria organism_desc=Good
kynureninase Tax=GWB2_Desulfobacterales_56_26_curated
kynureninase
13_1_40cm_4_scaffold_10685_15
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

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comp(15637..16419)
DNA (783bp) protein (261aa)
Tryptophan 2,3-dioxygenase {ECO:0000255|HAMAP-Rule:MF_01972}; Short=TDO {ECO:0000255|HAMAP-Rule:MF_01972};; EC=1.13.11.11 {ECO:0000255|HAMAP-Rule:MF_01972};; Tryptamin 2,3-dioxygenase {ECO:0000255|HAM
Tryptophan 2,3-dioxygenase n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=T23O_HERA2
tryptophan 23-dioxygenase
13_1_40cm_4_scaffold_10685_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(17126..18610)
DNA (1485bp) protein (495aa)
oxidoreductase (EC:1.-.-.-); K09461 anthraniloyl-CoA monooxygenase [EC:1.14.13.40] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Salicylyl-CoA 5-hydroxylase n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4YEH4_SORCE
salicylyl-CoA 5-hydroxylase
13_1_40cm_4_scaffold_10685_17
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(18607..19749)
DNA (1143bp) protein (381aa)
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KGF82116.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
acyl-CoA dehydrogenase-like protein
Acyl-CoA dehydrogenases id=1757989 bin=GWD2_Deltaproteobacteria_55_8 species=uncultured nuHF2 cluster bacterium HF0500_39O04 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_1_40cm_4_scaffold_10685_18
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(19749..20537)
DNA (789bp) protein (263aa)
enoyl-CoA hydratase (EC:4.2.1.17)
Enoyl-CoA hydratase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FQH6_SORC5
Enoyl-CoA hydratase {ECO:0000313|EMBL:EYF00334.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces
13_1_40cm_4_scaffold_10685_19
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(20534..20914)
DNA (381bp) protein (127aa)
Bona fide RidA/YjgF/TdcF/RutC subgroup {ECO:0000313|EMBL:AKF07328.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;"
Endoribonuclease L-PSP id=3925212 bin=GWC2_Syntrophobacterales_56_13 species=unknown genus=Paracoccus taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
endoribonuclease L-PSP
13_1_40cm_4_scaffold_10685_20
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(20924..21649)
DNA (726bp) protein (242aa)
Putative oxidoreductase (Beta-hydroxyacyl-CoA dehydrogenase) protein (AbmB) n=1 Tax=Ralstonia solanacearum RepID=D8MYJ2_RALSL
putative oxidoreductase (beta-hydroxyacyl-CoA dehydrogenase) protein (abmB)
Putative oxidoreductase (Beta-hydroxyacyl-CoA dehydrogenase) protein (AbmB) {ECO:0000313|EMBL:CBJ34410.1}; TaxID=305 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderi
13_1_40cm_4_scaffold_10685_21
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(21636..22100)
DNA (465bp) protein (155aa)
Creatininase n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LVM0_HALO1
creatininase
Creatininase {ECO:0000313|EMBL:ACY17581.1}; TaxID=502025 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum
13_1_40cm_4_scaffold_10685_22
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(22187..22387)
DNA (201bp) protein (67aa)
Creatininase n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LVM0_HALO1
creatininase
Creatininase {ECO:0000313|EMBL:ACY17581.1}; TaxID=502025 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum
13_1_40cm_4_scaffold_10685_23
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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22402..23727
DNA (1326bp) protein (442aa)
Benzoate-CoA ligase family n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LVL9_HALO1
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:EYF05781.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source
benzoate-CoA ligase family
13_1_40cm_4_scaffold_10685_trna_1
unknown

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23905..23991
DNA (87bp)
transferRNA
13_1_40cm_4_scaffold_10685_trna_2
unknown

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24105..24191
DNA (87bp)
transferRNA
13_1_40cm_4_scaffold_10685_24
unknown

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24225..24923
DNA (699bp) protein (233aa)

This feature has no annotations

13_1_40cm_4_scaffold_10685_25
RBG_19FT_COMBO_Aminicenantes_59_29_curated, Aminicenantes, Bacteria

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24920..25726
DNA (807bp) protein (269aa)
hypothetical protein id=8267249 bin=CD_OP8_4m species=Gracilimonas tropica genus=Gracilimonas taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
lipoprotein NlpI, contains TPR repeats Tax=RBG_19FT_COMBO_Aminicenantes_59_29_curated
Tetratricopeptide TPR_2 repeat-containing protein
13_1_40cm_4_scaffold_10685_26
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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25723..26046
DNA (324bp) protein (108aa)
Putative uncharacterized protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VG10_CAUST
Uncharacterized protein {ECO:0000313|EMBL:KJC61070.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp
hypothetical protein
13_1_40cm_4_scaffold_10685_27
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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26043..27425
DNA (1383bp) protein (461aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI000369B1CF
Peptidase M20 {ECO:0000313|EMBL:EYF06850.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apicu
hypothetical protein
13_1_40cm_4_scaffold_10685_28
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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27422..28549
DNA (1128bp) protein (376aa)
citrate (Si)-synthase (EC:2.3.3.1); K01647 citrate synthase [EC:2.3.3.1] Tax=RBG_16_RIF_WS3X_71_46_curated
citrate (Si)-synthase (EC:2.3.3.1)
Citrate synthase n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QXM0_9EURY id=5225332 bin=16ft_combo_ws3_JS1 species=Haladaptatus paucihalophilus genus=Haladaptatus taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Displaying items 1-30 of 34 in total

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