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13_1_40cm_4_scaffold_1086

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1086_1
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1512
DNA (1512bp) protein (504aa)
Oligopeptide ABC transporter, ATP-binding components n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AIM6_AZOBR
microcin ABC transporter ATP-binding protein
Microcin ABC transporter ATP-binding protein {ECO:0000313|EMBL:AIB10793.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" sourc
13_1_40cm_4_scaffold_1086_2
unknown

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1852..2115
DNA (264bp) protein (88aa)

This feature has no annotations

13_1_40cm_4_scaffold_1086_3
unknown

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comp(2407..2643)
DNA (237bp) protein (79aa)

This feature has no annotations

13_1_40cm_4_scaffold_1086_4
unknown

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comp(2746..3102)
DNA (357bp) protein (119aa)

This feature has no annotations

13_1_40cm_4_scaffold_1086_5
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(3102..3245)
DNA (144bp) protein (48aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
13_1_40cm_4_scaffold_1086_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

3450..3827
DNA (378bp) protein (126aa)
Putative uncharacterized protein id=4304036 bin=GWC2_Methylomirabilis_70_16 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_1_40cm_4_scaffold_1086_7
R_Acidobacteria_67_21, Acidobacteria, Bacteria

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3961..7395
DNA (3435bp) protein (1145aa)
Helicase domain protein n=1 Tax=Desulforudis audaxviator (strain MP104C) RepID=B1I2C6_DESAP
helicase domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
helicase domain-containing protein
13_1_40cm_4_scaffold_1086_8
RLO_PLX_64_10, Bacteria

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7392..10094
DNA (2703bp) protein (901aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003711C66
SMC domain-containing protein Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
SMC domain-containing protein
13_1_40cm_4_scaffold_1086_9
RLO_PLX_64_10, Bacteria

Not on your lists

10106..11344
DNA (1239bp) protein (413aa)
ATP-dependent DNA helicase RecG domain protein; K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12] Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000371941F
ATP-dependent DNA helicase RecG domain-containing protein
13_1_40cm_4_scaffold_1086_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

12155..14293
DNA (2139bp) protein (713aa)
Uncharacterized protein n=1 Tax=Desulforudis audaxviator (strain MP104C) RepID=B1I299_DESAP
Adenine-specific DNA methylase containing a Zn-ribbon Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_1_40cm_4_scaffold_1086_11
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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14317..17055
DNA (2739bp) protein (913aa)
ATPase (AAA+ superfamily)-like protein id=4036628 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ATPase AAA Tax=CG_Rhodocyc_01
ATPase AAA
13_1_40cm_4_scaffold_1086_12
unknown

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comp(17491..17727)
DNA (237bp) protein (79aa)

This feature has no annotations

13_1_40cm_4_scaffold_1086_13
unknown

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18175..18879
DNA (705bp) protein (235aa)

This feature has no annotations

13_1_40cm_4_scaffold_1086_14
Methylomicrobium alcaliphilum, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(18922..19341)
DNA (420bp) protein (140aa)
Conjugal transfer protein trbG {ECO:0000313|EMBL:CCE25745.1}; TaxID=1091494 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methy
13_1_40cm_4_scaffold_1086_15
unknown

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19444..20289
DNA (846bp) protein (282aa)

This feature has no annotations

13_1_40cm_4_scaffold_1086_16
unknown

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20294..20560
DNA (267bp) protein (89aa)

This feature has no annotations

13_1_40cm_4_scaffold_1086_17
Legionella drancourtii, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(20529..21644)
DNA (1116bp) protein (372aa)
Prophage dlp12 integrase n=1 Tax=Legionella drancourtii LLAP12 RepID=G9EPH0_9GAMM
Prophage dlp12 integrase {ECO:0000313|EMBL:EHL31005.1}; TaxID=658187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella drancourtii
integrase
13_1_40cm_4_scaffold_1086_trna_2
unknown

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comp(21786..21858)
DNA (73bp)
transferRNA
13_1_40cm_4_scaffold_1086_trna_1
unknown

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comp(21907..21977)
DNA (71bp)
transferRNA
13_1_40cm_4_scaffold_1086_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22077..22349)
DNA (273bp) protein (91aa)
histone family protein DNA-binding protein; K03530 DNA-binding protein HU-beta Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Histone family protein DNA-binding protein id=4493677 bin=GWC2_Methylomirabilis_70_16 species=Desulfurispirillum indicum genus=Desulfurispirillum taxon_order=Chrysiogenales taxon_class=Chrysiogenetes phylum=Chrysiogenetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
histone family protein DNA-binding protein
13_1_40cm_4_scaffold_1086_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22431..25484)
DNA (3054bp) protein (1018aa)
multi-sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Multi-sensor signal transduction histidine kinase id=3564564 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
GAF sensor hybrid histidine kinase
13_1_40cm_4_scaffold_1086_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

25523..26035
DNA (513bp) protein (171aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4493681 bin=GWC2_Methylomirabilis_70_16 species=Desulfonatronospira thiodismutans genus=Desulfonatronospira taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_1086_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

26032..27498
DNA (1467bp) protein (489aa)
ubiD1; 3-octaprenyl-4-hydroxybenzoate carboxylyase UbiD (EC:4.1.1.-) Tax=GWA2_Rokubacteria_73_35_curated
3-octaprenyl-4-hydroxybenzoate carboxylyase UbiD id=3564567 bin=GWA2_Methylomirabilis_73_35 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
menaquinone biosynthesis decarboxylase
13_1_40cm_4_scaffold_1086_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

27513..28307
DNA (795bp) protein (265aa)
4-hydroxybenzoate polyprenyltransferase (EC:2.5.1.39) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
4-hydroxybenzoate polyprenyltransferase (EC:2.5.1.39)
4-hydroxybenzoate polyprenyltransferase id=4493686 bin=GWC2_Methylomirabilis_70_16 species=Meiothermus ruber genus=Meiothermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_1086_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

28358..28939
DNA (582bp) protein (194aa)
ubiquinone/menaquinone biosynthesis methyltransferase; K03183 ubiquinone/menaquinone biosynthesis methyltransferase [EC:2.1.1.163 2.1.1.201] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Demethylmenaquinone methyltransferase id=3564574 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ubiquinone/menaquinone biosynthesis methyltransferase
Displaying 25 items

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