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13_1_40cm_4_scaffold_1114

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1114_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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2..907
DNA (906bp) protein (302aa)
processing peptidase (EC:3.4.24.64) Tax=GWA2_Rokubacteria_73_35_curated
processing peptidase (EC:3.4.24.64)
Peptidase M16B family, nonpeptidase-like protein id=2598286 bin=GWA2_Methylomirabilis_73_35 species=Leptolyngbya sp. PCC 6406 genus=Leptolyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1114_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

904..1605
DNA (702bp) protein (234aa)
Putative peptidase, S54 (Rhomboid) family id=2598285 bin=GWA2_Methylomirabilis_73_35 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptidase, S54 (Rhomboid) family Tax=GWA2_Rokubacteria_73_35_curated
peptidase, S54 (Rhomboid) family
13_1_40cm_4_scaffold_1114_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1617..2414
DNA (798bp) protein (266aa)
hemolysin A; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rRNA methylase; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] id=14627678 bin=bin7_NC10_sister species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
rRNA methyltransferase
13_1_40cm_4_scaffold_1114_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2411..3268
DNA (858bp) protein (286aa)
inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kinase)(ppnK) (EC:2.7.1.23) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kinase)(ppnK) (EC:2.7.1.23)
Probable inorganic polyphosphate/ATP-NAD kinase id=2598283 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1114_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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3329..5017
DNA (1689bp) protein (563aa)
DNA repair and genetic recombination protein id=2598282 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
recN; DNA repair and genetic recombination protein; K03631 DNA repair protein RecN (Recombination protein N) Tax=GWA2_Rokubacteria_73_35_curated
recN; DNA repair protein RecN
13_1_40cm_4_scaffold_1114_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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5028..7814
DNA (2787bp) protein (929aa)
secA; preprotein translocase subunit SecA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
secA; preprotein translocase subunit SecA; K03070 preprotein translocase subunit SecA id=14627675 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
secA; preprotein translocase subunit SecA
13_1_40cm_4_scaffold_1114_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7906..11454
DNA (3549bp) protein (1183aa)
condensin subunit Smc; K03529 chromosome segregation protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Chromosome partition protein Smc id=2874900 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
chromosome segregation protein SMC
13_1_40cm_4_scaffold_1114_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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11494..12393
DNA (900bp) protein (300aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcriptional regulator, XRE family id=4879989 bin=GWC2_Methylomirabilis_70_24 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_40cm_4_scaffold_1114_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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12390..13316
DNA (927bp) protein (309aa)
ftsY; signal recognition particle-docking protein ftsy; K03110 fused signal recognition particle receptor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Signal recognition particle receptor FtsY id=4253322 bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ftsY; signal recognition particle-docking protein ftsy
13_1_40cm_4_scaffold_1114_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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13313..14437
DNA (1125bp) protein (375aa)
riboflavin biosynthesis protein RibD (EC:1.1.1.193 3.5.4.26); K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] T
riboflavin biosynthesis protein RibD (EC:1.1.1.193 3.5.4.26)
Riboflavin biosynthesis protein RibD id=4253324 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1114_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14437..15039
DNA (603bp) protein (201aa)
RibC; riboflavin synthase subunit alpha (EC:2.5.1.9); K00793 riboflavin synthase [EC:2.5.1.9] Tax=GWA2_Rokubacteria_73_35_curated
Riboflavin synthase alpha chain (Fragment) id=4253327 bin=GWA2_Methylomirabilis_73_35 species=Heliobacillus mobilis genus=Heliobacillus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribE; riboflavin synthase subunit alpha
13_1_40cm_4_scaffold_1114_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15036..16247
DNA (1212bp) protein (404aa)
riboflavin biosynthesis protein RibA (EC:3.5.4.25); K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_cura
riboflavin biosynthesis GTP cyclohydrolase II RibA (EC:3.5.4.25)
Riboflavin biosynthesis protein RibA id=4253329 bin=GWA2_Methylomirabilis_73_35 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1114_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

16249..16848
DNA (600bp) protein (200aa)
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] Tax=GWA2_Rokubacteria_73_35_curated
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase id=4041875 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1114_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16849..17265
DNA (417bp) protein (139aa)
N utilization substance protein B homolog id=4041876 bin=GWA2_Methylomirabilis_73_35 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nusB; N utilization substance protein B Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
transcription antitermination factor NusB
13_1_40cm_4_scaffold_1114_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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17274..17999
DNA (726bp) protein (242aa)
Metallophosphoesterase id=4041877 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphatase family protein Tax=GWA2_Rokubacteria_73_35_curated
metallophosphoesterase
13_1_40cm_4_scaffold_1114_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17987..19117
DNA (1131bp) protein (377aa)
lnt-1; apolipoprotein N-acyltransferase; K03820 apolipoprotein N-acyltransferase [EC:2.3.1.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
lnt; Apolipoprotein N-acyltransferase (ALP N-acyltransferase) (EC:2.3.1.-)
Apolipoprotein N-acyltransferase id=4041878 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1114_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19089..19472
DNA (384bp) protein (128aa)
lnt-1; apolipoprotein N-acyltransferase; K03820 apolipoprotein N-acyltransferase [EC:2.3.1.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Apolipoprotein N-acyltransferase id=4041878 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lnt; apolipoprotein N-acyltransferase
13_1_40cm_4_scaffold_1114_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19587..20576
DNA (990bp) protein (330aa)
hypothetical protein; K02836 peptide chain release factor 2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptide chain release factor 2 id=4041879 bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
protein PrfB
13_1_40cm_4_scaffold_1114_19
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20536..21930)
DNA (1395bp) protein (465aa)
hypothetical protein n=1 Tax=Burkholderia oklahomensis RepID=UPI00016A7C32
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA50357.1}; TaxID=320372 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source
13_1_40cm_4_scaffold_1114_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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22234..23319
DNA (1086bp) protein (362aa)
lolC; Lipoprotein releasing system, transmembrane protein, LolC/E family Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
lolC; Lipoprotein releasing system, transmembrane protein, LolC/E family id=14627199 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
lolC; Lipoprotein releasing system, transmembrane protein, LolC/E family
13_1_40cm_4_scaffold_1114_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23312..24028
DNA (717bp) protein (239aa)
ABC transporter; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter related id=4879977 bin=GWC2_Methylomirabilis_70_24 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ABC transporter
13_1_40cm_4_scaffold_1114_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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24162..26609
DNA (2448bp) protein (816aa)
ATPase AAA; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ATPase AAA; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC id=14627196 bin=bin7_NC10_sister species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
ATPase AAA
13_1_40cm_4_scaffold_1114_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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26657..29065
DNA (2409bp) protein (803aa)
Surface antigen (D15) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Surface antigen (D15) id=14627195 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
outer membrane protein assembly complex, YaeT protein
13_1_40cm_4_scaffold_1114_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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29016..29423
DNA (408bp) protein (136aa)
outer membrane chaperone Skp; K06142 outer membrane protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Outer membrane chaperone Skp (OmpH) id=3956968 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
outer membrane chaperone skp (omph)
13_1_40cm_4_scaffold_1114_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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29423..29578
DNA (156bp) protein (52aa)
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; K02536 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
UDP-3-O-acylglucosamine N-acyltransferase id=3956967 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
Displaying 25 items

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