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13_1_40cm_4_scaffold_1189

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1189_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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1..2388
DNA (2388bp) protein (796aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Leucine--tRNA ligase id=4527058 bin=GWF2_Methylomirabilis_70_14 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
leuS; leucyl-tRNA synthetase
13_1_40cm_4_scaffold_1189_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2385..2900
DNA (516bp) protein (172aa)
Putative uncharacterized protein id=2720730 bin=GWA2_Methylomirabilis_73_35 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_1189_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3233..4243
DNA (1011bp) protein (337aa)
holA; DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta [EC:2.7.7.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative DNA polymerase III, delta subunit id=2720729 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Eggerthella taxon_order=Coriobacteriales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA polymerase III subunit delta
13_1_40cm_4_scaffold_1189_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4240..5640
DNA (1401bp) protein (467aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=2720728 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1189_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(5652..5903)
DNA (252bp) protein (84aa)
30S ribosomal protein S20; K02968 small subunit ribosomal protein S20 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
30S ribosomal protein S20 id=2720727 bin=GWA2_Methylomirabilis_73_35 species=uncultured Chloroflexi bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S20
13_1_40cm_4_scaffold_1189_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6044..7618
DNA (1575bp) protein (525aa)
integral membrane protein MviN; K03980 virulence factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Integral membrane protein MviN id=2720726 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
integral membrane protein MviN
13_1_40cm_4_scaffold_1189_7
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

7715..8599
DNA (885bp) protein (295aa)
XerD; site-specific recombinase XerD; K04763 integrase/recombinase XerD id=14625766 bin=bin7_NC10_sister species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
XerD; site-specific recombinase XerD; K04763 integrase/recombinase XerD Tax=CSP1_6_Rokubacteria
recombinase
13_1_40cm_4_scaffold_1189_8
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

8602..10248
DNA (1647bp) protein (549aa)
hypothetical protein; K00974 tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] id=14625765 bin=bin7_NC10_sister species=Aminomonas paucivorans genus=Aminomonas taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=bin7_NC10_sister organism_group=NC10
hypothetical protein; K00974 tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] Tax=CSP1_6_Rokubacteria
hypothetical protein
13_1_40cm_4_scaffold_1189_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10250..12754
DNA (2505bp) protein (835aa)
pyrG; CTP synthase (CTP synthetase) (EC:6.3.4.2) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pyrG; CTP synthase (CTP synthetase) (EC:6.3.4.2) id=14625764 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pyrG; CTP synthase (CTP synthetase) (EC:6.3.4.2)
13_1_40cm_4_scaffold_1189_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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12751..13731
DNA (981bp) protein (327aa)
kpsF; arabinose 5-phosphate isomerase (EC:5.3.1.13) Tax=GWA2_Rokubacteria_73_35_curated
kpsF; arabinose 5-phosphate isomerase (EC:5.3.1.13)
Arabinose 5-phosphate isomerase id=3879936 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1189_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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13839..14393
DNA (555bp) protein (185aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Hypothetical membrane protein id=3879938 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1189_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14390..14947
DNA (558bp) protein (186aa)
lipopolysaccharide transport periplasmic protein LptA; K09774 lipopolysaccharide export system protein LptA Tax=GWA2_Rokubacteria_73_35_curated
Lipopolysaccharide transport periplasmic protein LptA id=4810649 bin=GWC2_Methylomirabilis_70_16 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
lptA; lipopolysaccharide ABC transporter periplasmic protein LptA
13_1_40cm_4_scaffold_1189_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14951..15673
DNA (723bp) protein (241aa)
lptB; lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily id=3879942 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lptB; lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily
13_1_40cm_4_scaffold_1189_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15694..17088
DNA (1395bp) protein (465aa)
RNA polymerase sigma-54 factor id=3879943 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RNA polymerase sigma 54 subunit RpoN; K03092 RNA polymerase sigma-54 factor Tax=GWA2_Rokubacteria_73_35_curated
RNA polymerase sigma 54 subunit RpoN
13_1_40cm_4_scaffold_1189_15
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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17123..17452
DNA (330bp) protein (110aa)
sigma 54 modulation protein/ribosomal protein S30EA; K05808 putative sigma-54 modulation protein id=14625756 bin=bin7_NC10_sister species=Desulfurispora thermophila genus=Desulfurispora taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
sigma 54 modulation protein/ribosomal protein S30EA; K05808 putative sigma-54 modulation protein Tax=CSP1_6_Rokubacteria
13_1_40cm_4_scaffold_1189_16
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

17457..18326
DNA (870bp) protein (290aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
UPF0042 nucleotide-binding protein DAMO_1192 id=3879946 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1189_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

18344..20437
DNA (2094bp) protein (698aa)
4-alpha-glucanotransferase Tax=GWA2_Rokubacteria_73_35_curated
4-alpha-glucanotransferase id=3879949 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
4-alpha-glucanotransferase
13_1_40cm_4_scaffold_1189_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20434..21480
DNA (1047bp) protein (349aa)
bifunctional phosphoglucose/phosphomannose isomerase (EC:5.3.1.8); K15916 glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
bifunctional phosphoglucose/phosphomannose isomerase (EC:5.3.1.8)
Bifunctional phosphoglucose/phosphomannose isomerase id=3879951 bin=GWA2_Methylomirabilis_73_35 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1189_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21549..22700
DNA (1152bp) protein (384aa)
metK; S-adenosylmethionine synthetase (EC:2.5.1.6); K00789 S-adenosylmethionine synthetase [EC:2.5.1.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
metK; methionine adenosyltransferase (EC:2.5.1.6) id=14625753 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
metK; methionine adenosyltransferase (EC:2.5.1.6)
13_1_40cm_4_scaffold_1189_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22789..24006
DNA (1218bp) protein (406aa)
ahcY; adenosylhomocysteinase (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
adenosylhomocysteinase (EC:3.3.1.1)
Adenosylhomocysteinase id=4810684 bin=GWC2_Methylomirabilis_70_16 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_1189_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

24026..26734
DNA (2709bp) protein (903aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
UPF0182 protein DAMO_1249 id=3462292 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1189_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

26731..27729
DNA (999bp) protein (333aa)
oxidoreductase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Oxidoreductase id=2247794 bin=GWA2_Methylomirabilis_73_35 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oxidoreductase
13_1_40cm_4_scaffold_1189_23
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(27726..28004)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Alicyclobacillus acidoterrestris ATCC 49025 RepID=T0CJH4_9BACL
Uncharacterized protein {ECO:0000313|EMBL:EPZ52964.1}; TaxID=1356854 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus acidoterrestr
hypothetical protein
13_1_40cm_4_scaffold_1189_24
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(28001..29308)
DNA (1308bp) protein (436aa)
phthalate 4,5-dioxygenase (EC:1.14.12.7)
Uncharacterized protein n=1 Tax=Alicyclobacillus acidoterrestris ATCC 49025 RepID=T0DU28_9BACL
Uncharacterized protein {ECO:0000313|EMBL:ETX09342.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
13_1_40cm_4_scaffold_1189_25
unknown

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comp(29339..29485)
DNA (147bp) protein (49aa)

This feature has no annotations

Displaying 25 items

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