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13_1_40cm_4_scaffold_12

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_12_1
unknown

Not on your lists

997..1605
DNA (609bp) protein (203aa)

This feature has no annotations

13_1_40cm_4_scaffold_12_2
unknown

Not on your lists

1842..2243
DNA (402bp) protein (134aa)

This feature has no annotations

13_1_40cm_4_scaffold_12_3
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(2289..2780)
DNA (492bp) protein (164aa)
cytidyltransferase (EC:2.7.7.3) Tax=RBG_16_Archaea_50_20_curated
cytidyltransferase (EC:2.7.7.3)
Cytidyltransferase-related domain protein n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GWL3_METFV
13_1_40cm_4_scaffold_12_4
unknown

Not on your lists

2989..3483
DNA (495bp) protein (165aa)

This feature has no annotations

13_1_40cm_4_scaffold_12_5
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3560..4159
DNA (600bp) protein (200aa)
Rhomboid family protein n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5YF59_PARAH
rhomboid family protein
Rhomboid family protein {ECO:0000313|EMBL:AGT10088.1}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminoph
13_1_40cm_4_scaffold_12_6
unknown

Not on your lists

4676..6466
DNA (1791bp) protein (597aa)

This feature has no annotations

13_1_40cm_4_scaffold_12_trna_1
unknown

Not on your lists

comp(6867..7005)
DNA (139bp)
transferRNA
13_1_40cm_4_scaffold_12_7
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

7604..8536
DNA (933bp) protein (311aa)
Transcription initiation factor IIB n=1 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7U4W7_9ARCH
transcription factor TFIIB cyclin-related protein; K03124 transcription initiation factor TFIIB Tax=RBG_13_Bathyarchaeota_38_9_curated
tfb1; transcription initiation factor IIB
13_1_40cm_4_scaffold_12_8
unknown

Not on your lists

comp(8545..8793)
DNA (249bp) protein (83aa)

This feature has no annotations

13_1_40cm_4_scaffold_12_9
Staphylothermus marinus, Staphylothermus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(9749..10852)
DNA (1104bp) protein (368aa)
Glycosyl transferase, group 1 n=1 Tax=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) RepID=A3DN36_STAMF
group 1 glycosyl transferase
Glycosyl transferase, group 1 {ECO:0000313|EMBL:ABN70046.1}; TaxID=399550 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Staphylothermus.;" source="Staphylotherm
13_1_40cm_4_scaffold_12_10
CG_Pacearch_01, Pacearchaeota, Archaea

Not on your lists

comp(10893..11852)
DNA (960bp) protein (320aa)
dTDP-glucose 4,6-dehydratase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] Tax=CG_Pacearch_01
NAD-dependent epimerase/dehydratase n=1 Tax=Mesotoga sp. PhosAc3 RepID=N1JM77_9THEM
NAD-dependent epimerase/dehydratase
13_1_40cm_4_scaffold_12_11
R_OD1_Giovannonibacteria_45_23, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(11849..12556)
DNA (708bp) protein (236aa)
Nucleotidyl transferase n=1 Tax=Caldivirga maquilingensis (strain ATCC 700844 / DSM 13496 / JCM 10307 / IC-167) RepID=A8MDH4_CALMQ
nucleotidyl transferase Tax=RIFCSPHIGHO2_01_FULL_OD1_Giovannonibacteria_45_23_curated
nucleotidyl transferase
13_1_40cm_4_scaffold_12_12
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(12712..13644)
DNA (933bp) protein (311aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UVW9_ROSS1
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ABQ90772.1}; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Ros
13_1_40cm_4_scaffold_12_13
Arthrobacter globiformis, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13669..14436)
DNA (768bp) protein (256aa)
glycosyltransferase (EC:2.4.1.-)
UPI0003D7A328 related cluster n=1 Tax=unknown RepID=UPI0003D7A328
Putative hydrolase {ECO:0000313|EMBL:GAB13008.1}; TaxID=1077972 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter globiformis NBRC 12137.;"
13_1_40cm_4_scaffold_12_14
unknown

Not on your lists

comp(14443..14808)
DNA (366bp) protein (122aa)

This feature has no annotations

13_1_40cm_4_scaffold_12_15
Marine Group I thaumarchaeote SCGC RSA3, Thaumarchaeota, Archaea

Not on your lists

14970..15233
DNA (264bp) protein (88aa)
Uncharacterized protein {ECO:0000313|EMBL:KFM19932.1}; TaxID=1503183 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Marine Group I.;" source="Marine Group I thaumarchaeote SCGC RSA3.;"
hypothetical protein
13_1_40cm_4_scaffold_12_16
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

15476..15739
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Thermofilum pendens (strain Hrk 5) RepID=A1RX12_THEPD
hypothetical protein Tax=RBG_13_Bathyarchaeota_38_9_curated
hypothetical protein
13_1_40cm_4_scaffold_12_17
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

15776..16573
DNA (798bp) protein (266aa)
Tax=RBG_13_Bathyarchaeota_38_9_curated
13_1_40cm_4_scaffold_12_18
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(17173..18528)
DNA (1356bp) protein (452aa)
pgm-1; alpha-phosphoglucomutase / phosphomannomutase (EC:5.4.2.8 5.4.2.2); K15778 phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] Tax=RBG_13_Bathyarchaeota_38_9_curated
Phosphomannomutase n=1 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7TA45_9ARCH
phosphoglucosamine mutase
13_1_40cm_4_scaffold_12_19
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(18551..19591)
DNA (1041bp) protein (347aa)
Gcd1.2; nucleoside-diphosphate-sugar pyrophosphorylase; K00966 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]; K01840 phosphomannomutase [EC:5.4.2.8] Tax=RBG_16_Archaea_50_20_curated
Nucleotidyl transferase n=1 Tax=Thermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485) RepID=I3VT03_THESW
nucleotidyltransferase
13_1_40cm_4_scaffold_12_20
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

19739..20626
DNA (888bp) protein (296aa)
Putative GHMP kinase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGS5_NITGG
GHMP kinase Tax=RBG_13_Bathyarchaeota_46_16b_curated
GHMP kinase
13_1_40cm_4_scaffold_12_21
Pyrobaculum calidifontis, Pyrobaculum, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

20623..21375
DNA (753bp) protein (251aa)
pantothenate synthetase (EC:6.3.2.1)
Pantothenate synthetase {ECO:0000313|EMBL:ABO07819.1}; EC=6.3.2.1 {ECO:0000313|EMBL:ABO07819.1};; TaxID=410359 species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Pyrobac
Pantothenate synthetase n=1 Tax=Pyrobaculum calidifontis (strain JCM 11548 / VA1) RepID=A3MT52_PYRCJ
13_1_40cm_4_scaffold_12_22
CG_Desulfarul_01, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21366..22247
DNA (882bp) protein (294aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC:2.1.2.11); K00606 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] Tax=CG_Desulfarul_01
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC:2.1.2.11)
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Desulfotomaculum reducens (strain MI-1) RepID=A4J0V6_DESRM
13_1_40cm_4_scaffold_12_23
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22252..23172
DNA (921bp) protein (307aa)
2-dehydropantoate 2-reductase (EC:1.1.1.169); K00077 2-dehydropantoate 2-reductase [EC:1.1.1.169] Tax=RBG_13_Deltaproteobacteria_61_14_curated
2-dehydropantoate 2-reductase n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TC11_HELMI
panE; 2-dehydropantoate 2-reductase
13_1_40cm_4_scaffold_12_24
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

comp(23209..24150)
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=crenarchaeote SCGC AAA261-L14 RepID=UPI000362A8E6
dehydrogenase Tax=RBG_16_Bathyarchaeota_48_13_curated
dehydrogenase
13_1_40cm_4_scaffold_12_25
Pyrococcus sp. NA2, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

comp(24147..25292)
DNA (1146bp) protein (382aa)
UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HIR9_PYRSN
UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase
UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase {ECO:0000313|EMBL:AEC51118.1}; TaxID=342949 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyro
13_1_40cm_4_scaffold_12_26
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

25709..26791
DNA (1083bp) protein (361aa)
Uncharacterized protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJF7_NITGG
hypothetical protein Tax=RBG_16_Bathyarchaeota_48_13_curated
hypothetical protein
13_1_40cm_4_scaffold_12_27
Kosmotoga olearia, Kosmotoga, Kosmotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

26788..28146
DNA (1359bp) protein (453aa)
nucleotide sugar dehydrogenase (EC:1.1.1.22)
Nucleotide sugar dehydrogenase {ECO:0000313|EMBL:ACR80329.1}; EC=1.1.1.22 {ECO:0000313|EMBL:ACR80329.1};; TaxID=521045 species="Bacteria; Thermotogae; Kosmotogales; Kosmotogaceae; Kosmotoga.;" source=
UDP-N-acetyl-D-mannosaminuronate dehydrogenase n=2 Tax=Kosmotoga olearia (strain TBF 19.5.1) RepID=B5M6M9_KOSOT
13_1_40cm_4_scaffold_12_28
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

28522..28785
DNA (264bp) protein (88aa)
Uncharacterized protein family UPF0434/Trm112 n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ICD1_NITGG
hypothetical protein Tax=RBG_13_Bathyarchaeota_46_16b_curated
uncharacterized protein family UPF0434/Trm112
13_1_40cm_4_scaffold_12_29
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

comp(28786..29520)
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L1Q8_THERP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM04954.1}; TaxID=309801 species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium roseum (strain ATC
Displaying items 1-30 of 48 in total

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