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13_1_40cm_4_scaffold_1299

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1299_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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2..241
DNA (240bp) protein (80aa)
RNA binding S1 domain protein
RNA binding S1 domain protein {ECO:0000313|EMBL:AHG90957.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
rpsA; 30S ribosomal protein S1; K02945 small subunit ribosomal protein S1 id=24464105 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
13_1_40cm_4_scaffold_1299_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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596..1894
DNA (1299bp) protein (433aa)
acyl-CoA carboxylase beta chain (EC:6.4.1.-); K01966 propionyl-CoA carboxylase beta chain [EC:6.4.1.3] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Acyl-CoA carboxylase beta chain n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A400_GEMAT
carboxyl transferase
13_1_40cm_4_scaffold_1299_3
unknown

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1875..2870
DNA (996bp) protein (332aa)

This feature has no annotations

13_1_40cm_4_scaffold_1299_4
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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2887..4413
DNA (1527bp) protein (509aa)
acyl-CoA carboxylase alpha chain (EC:6.4.1.-) Tax=RBG_16_Gemmatimonadetes_66_8_curated
acyl-CoA carboxylase alpha chain (EC:6.4.1.-)
Acyl-CoA carboxylase alpha chain n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Z9_GEMAT
13_1_40cm_4_scaffold_1299_5
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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4410..5657
DNA (1248bp) protein (416aa)
hypothetical protein; K00599 [EC:2.1.1.-] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Z8_GEMAT
(Uracil-5)-methyltransferase
13_1_40cm_4_scaffold_1299_6
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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5776..6294
DNA (519bp) protein (173aa)
Biotin carboxyl carrier protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Z7_GEMAT
biotin carboxyl carrier protein
Biotin carboxyl carrier protein {ECO:0000313|EMBL:BAH38822.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (s
13_1_40cm_4_scaffold_1299_7
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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6361..6804
DNA (444bp) protein (148aa)
50S ribosomal protein L13 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=RL13_GEMAT
rplM; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
rplM; 50S ribosomal protein L13
13_1_40cm_4_scaffold_1299_8
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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6801..7208
DNA (408bp) protein (136aa)
30S ribosomal protein S9 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=RS9_GEMAT
rpsI; 30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 Tax=RBG_16_Gemmatimonadetes_66_8_curated
rpsI; 30S ribosomal protein S9
13_1_40cm_4_scaffold_1299_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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7301..8194
DNA (894bp) protein (298aa)
30S ribosomal protein S2 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Z3_GEMAT
rpsB; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ribosomal protein S2
13_1_40cm_4_scaffold_1299_10
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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8287..8895
DNA (609bp) protein (203aa)
elongation factor Ts n=1 Tax=Thermodesulfobacterium thermophilum RepID=UPI0003B61283
translation elongation factor Ts; K02357 elongation factor Ts Tax=RBG_16_Gemmatimonadetes_66_8_curated
tsf; elongation factor Ts
13_1_40cm_4_scaffold_1299_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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8896..9612
DNA (717bp) protein (239aa)
pyrH; uridylate kinase (EC:2.7.4.22); K09903 uridylate kinase [EC:2.7.4.22] Tax=RBG_16_Gemmatimonadetes_66_8_curated
pyrH; uridylate kinase (EC:2.7.4.22)
Uridylate kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Z1_GEMAT
13_1_40cm_4_scaffold_1299_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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9609..10175
DNA (567bp) protein (189aa)
Ribosome-recycling factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Z0_GEMAT
frr; ribosome recycling factor; K02838 ribosome recycling factor Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Ribosome-recycling factor
13_1_40cm_4_scaffold_1299_13
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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10177..10917
DNA (741bp) protein (247aa)
uppS; UDP pyrophosphate synthetase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Isoprenyl transferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Y9_GEMAT
Undecaprenyl pyrophosphate synthase
13_1_40cm_4_scaffold_1299_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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10919..11770
DNA (852bp) protein (284aa)
cdsA; phosphatidate cytidylyltransferase (EC:2.7.7.41); K00981 phosphatidate cytidylyltransferase [EC:2.7.7.41] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Phosphatidate cytidylyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Y8_GEMAT
phosphatidate cytidylyltransferase
13_1_40cm_4_scaffold_1299_15
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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11767..12894
DNA (1128bp) protein (376aa)
dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267); K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] Tax=RBG_16_Gemmatimonadetes_66_8_curated
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Y7_GEMAT
1-deoxy-D-xylulose 5-phosphate reductoisomerase
13_1_40cm_4_scaffold_1299_16
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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12885..14246
DNA (1362bp) protein (454aa)
membrane-associated zinc metalloprotease; K11749 regulator of sigma E protease [EC:3.4.24.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Peptidase M50 id=3877206 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
membrane-associated zinc metalloprotease
13_1_40cm_4_scaffold_1299_17
unknown

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14221..14631
DNA (411bp) protein (137aa)

This feature has no annotations

13_1_40cm_4_scaffold_1299_18
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(14623..15510)
DNA (888bp) protein (296aa)
putative serine/threonine protein kinase (EC:2.7.11.1) Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
putative serine/threonine protein kinase (EC:2.7.11.1)
Putative serine/threonine protein kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Y3_GEMAT
13_1_40cm_4_scaffold_1299_19
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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15579..15869
DNA (291bp) protein (97aa)
30S ribosomal protein S15 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Y2_GEMAT
rpsO; 30S ribosomal protein S15
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" sourc
13_1_40cm_4_scaffold_1299_20
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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15879..17984
DNA (2106bp) protein (702aa)
pnp; polyribonucleotide nucleotidyltransferase (EC:2.7.7.8); K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Polyribonucleotide nucleotidyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=PNP_GEMAT
Polyribonucleotide nucleotidyltransferase
13_1_40cm_4_scaffold_1299_21
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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17984..19246
DNA (1263bp) protein (421aa)
Putative S16B family peptidase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Y0_GEMAT
putative S16B family peptidase Tax=RBG_16_Gemmatimonadetes_66_8_curated
peptidase M16 domain protein
13_1_40cm_4_scaffold_1299_22
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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19302..20414
DNA (1113bp) protein (371aa)
alanine dehydrogenase; K00259 alanine dehydrogenase [EC:1.4.1.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Alanine dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3X9_GEMAT
alanine dehydrogenase
13_1_40cm_4_scaffold_1299_23
unknown

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20431..20538
DNA (108bp) protein (36aa)

This feature has no annotations

13_1_40cm_4_scaffold_1299_24
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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20555..21862
DNA (1308bp) protein (436aa)
pfk; 6-Phosphofructokinase; K00850 6-phosphofructokinase [EC:2.7.1.11] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
6-Phosphofructokinase id=4689664 bin=GWC2_Methylomirabilis_70_16 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
pfk; 6-Phosphofructokinase
13_1_40cm_4_scaffold_1299_25
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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22071..23135
DNA (1065bp) protein (355aa)
Integron integrase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JVF8_DESAC id=5223759 bin=16ft_combo_ws3_JS1 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
integron integrase Tax=RBG_16_RIF_WS3X_71_46_curated
integron integrase
Displaying 25 items

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