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13_1_40cm_4_scaffold_1356

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1356_1
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(61..471)
-----------------
DNA (411bp)
protein (137aa)
Competence protein ComEA helix-hairpin-helix repeat protein n=2 Tax=Microbacterium RepID=H8E321_9MICO
competence protein ComEA-like protein with helix-hairpin-helix repeat region; K02237 competence protein ComEA Tax=RBG_16_Gemmatimonadetes_66_8_curated
comEA protein
13_1_40cm_4_scaffold_1356_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(653..1582)
-----------------
DNA (930bp)
protein (310aa)
hypothetical protein n=1 Tax=Armatimonadetes bacterium JGI 0000077-K19 RepID=UPI0003B4125B
peptidase M28 Tax=RBG_16_Gemmatimonadetes_66_8_curated
peptidase M28
13_1_40cm_4_scaffold_1356_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

1624..3147
-----------------
DNA (1524bp)
protein (508aa)
Permease YjgP/YjgQ family protein n=1 Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) RepID=B3QVN4_CHLT3
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
permease YjgP/YjgQ family protein
13_1_40cm_4_scaffold_1356_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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3144..4235
-----------------
DNA (1092bp)
protein (364aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA17_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
permease YjgP/YjgQ family protein
13_1_40cm_4_scaffold_1356_5
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(4255..7554)
-----------------
DNA (3300bp)
protein (1100aa)
TonB-dependent outer membrane receptor Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Putative uncharacterized protein id=3905234 bin=GWF2_Melioribacter_38_21 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
putative oar protein
13_1_40cm_4_scaffold_1356_6
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(7654..9024)
-----------------
DNA (1371bp)
protein (457aa)
Putative permease n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA22_GEMAT
putative permease; K03294 basic amino acid/polyamine antiporter, APA family Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
putative permease
13_1_40cm_4_scaffold_1356_7
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(9073..9384)
-----------------
DNA (312bp)
protein (104aa)
RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F1N8_ACIC5
ECF subfamily RNA polymerase sigma-70 factor
RNA polymerase sigma-70 factor, ECF subfamily {ECO:0000313|EMBL:ACO32741.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacteriu
13_1_40cm_4_scaffold_1356_8
unknown

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comp(9427..9771)
-----------------
DNA (345bp)
protein (115aa)

This feature has no annotations

13_1_40cm_4_scaffold_1356_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

9912..10796
-----------------
DNA (885bp)
protein (295aa)
protoheme IX farnesyltransferase (Heme O synthase) (HemeB farnesyltransferase) (EC:2.5.1.-)
Protoheme IX farnesyltransferase (Heme O synthase) (HemeB farnesyltransferase) n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L3N1_THERP
cytochrome oxidase assembly family protein; K02259 cytochrome c oxidase assembly protein subunit 15 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_4_scaffold_1356_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(10809..11249)
-----------------
DNA (441bp)
protein (147aa)
Putative M24 family peptidase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA28_GEMAT
putative M24 family peptidase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
peptidase M24
13_1_40cm_4_scaffold_1356_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(11952..12557)
-----------------
DNA (606bp)
protein (202aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA29_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_4_scaffold_1356_12
BJP_IG2158_Zixibacteria_48_33, Zixibacteria, Bacteria

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12628..13236
-----------------
DNA (609bp)
protein (203aa)
RNA polymerase sigma factor n=1 Tax=Melioribacter roseus (strain P3M) RepID=I7A135_MELRP
RNA polymerase sigma factor RpoE
Tax=BJP_IG2158_Zixibacteria_48_33
13_1_40cm_4_scaffold_1356_13
Saccharomonospora cyanea, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13233..13457
-----------------
DNA (225bp)
protein (75aa)
anti-sigma factor n=1 Tax=Amycolatopsis nigrescens RepID=UPI000369ED85
glycosyltransferase
Mycothiol system anti-sigma-R factor {ECO:0000313|EMBL:EHR62920.1}; TaxID=882082 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospor
13_1_40cm_4_scaffold_1356_14
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

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13454..14140
-----------------
DNA (687bp)
protein (229aa)
hypothetical protein id=14430416 bin=bin3_NC10 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=bin3_NC10 organism_group=NC10
hypothetical protein Tax=CSP1_3_Armatimonadetes
hypothetical protein
13_1_40cm_4_scaffold_1356_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

14154..15467
-----------------
DNA (1314bp)
protein (438aa)
Putative oxidoreductase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA31_GEMAT
putative oxidoreductase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
monooxygenase FAD-binding protein
13_1_40cm_4_scaffold_1356_16
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

15472..15960
-----------------
DNA (489bp)
protein (163aa)
putative oxidoreductase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
flavin reductase domain-containing protein id=14625818 bin=bin7_NC10_sister species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
flavin reductase domain protein FMN-binding protein
13_1_40cm_4_scaffold_1356_17
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

15957..16697
-----------------
DNA (741bp)
protein (247aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA33_GEMAT
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
Methyltransferase type 11
13_1_40cm_4_scaffold_1356_18
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

16816..17271
-----------------
DNA (456bp)
protein (152aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA34_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Polyketide cyclase/dehydrase
13_1_40cm_4_scaffold_1356_19
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

17330..18664
-----------------
DNA (1335bp)
protein (445aa)
fabF; 3-oxoacyl-ACP synthase II (EC:2.3.1.179); K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] Tax=GWC2_Gemmatimonadetes_71_10_curated
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA35_GEMAT
3-oxoacyl-[acyl-carrier-protein] synthase 2
13_1_40cm_4_scaffold_1356_20
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

18705..19388
-----------------
DNA (684bp)
protein (228aa)
MIP family channel protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TBS8_9CHLR
MIP family channel protein {ECO:0000313|EMBL:EFH89860.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter ra
MIP family channel protein
13_1_40cm_4_scaffold_1356_21
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

comp(19414..20385)
-----------------
DNA (972bp)
protein (324aa)
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=171953 species="Bacteria; Acidobacteria; environmental samples.;" source="unc
delta-aminolevulinic acid dehydratase (EC:4.2.1.24)
Delta-aminolevulinic acid dehydratase n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SPN3_9BACT
13_1_40cm_4_scaffold_1356_22
R_WOR_2_68_15, WOR-2, Bacteria

Not on your lists

comp(20382..21308)
-----------------
DNA (927bp)
protein (309aa)
hemC; porphobilinogen deaminase; K01749 hydroxymethylbilane synthase [EC:2.5.1.61] Tax=RIFCSPHIGHO2_02_FULL_WOR_2_68_15_curated
hydroxymethylbilane synthase (EC:2.5.1.61)
Porphobilinogen deaminase n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DKE8_CLOS4
13_1_40cm_4_scaffold_1356_23
Desulfovibrio gigas, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21305..22138)
-----------------
DNA (834bp)
protein (278aa)
Putative uroporphyrin-III C-methyltransferase n=1 Tax=Desulfovibrio gigas DSM 1382 = ATCC 19364 RepID=T2GC30_DESGI
putative uroporphyrin-III C-methyltransferase
Putative uroporphyrin-III C-methyltransferase {ECO:0000313|EMBL:AGW13472.1}; TaxID=1121448 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibri
13_1_40cm_4_scaffold_1356_24
unknown

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22157..22741
-----------------
DNA (585bp)
protein (195aa)

This feature has no annotations

13_1_40cm_4_scaffold_1356_25
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(22841..23098)
-----------------
DNA (258bp)
protein (86aa)
Heme exporter protein C n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L1F8_THERP
heme exporter protein C; K02195 heme exporter protein C Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
cytochrome c assembly protein
Displaying 25 items

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