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13_1_40cm_4_scaffold_1412

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1412_1
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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1..378
DNA (378bp) protein (126aa)
acetamidase/formamidase id=14627591 bin=bin7_NC10_sister species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
acetamidase/formamidase Tax=CSP1_6_Rokubacteria
putative amidase
13_1_40cm_4_scaffold_1412_2
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

379..1326
DNA (948bp) protein (316aa)
periplasmic solute binding protein; K09815 zinc transport system substrate-binding protein id=14627590 bin=bin7_NC10_sister species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
periplasmic solute binding protein; K09815 zinc transport system substrate-binding protein Tax=CSP1_6_Rokubacteria
periplasmic solute binding protein
13_1_40cm_4_scaffold_1412_3
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

1337..2671
DNA (1335bp) protein (445aa)
ABC-3 protein; K02075 zinc/manganese transport system permease protein id=14627589 bin=bin7_NC10_sister species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin7_NC10_sister organism_group=NC10
ABC-3 protein; K02075 zinc/manganese transport system permease protein Tax=CSP1_6_Rokubacteria
ABC-3 protein
13_1_40cm_4_scaffold_1412_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2610..3467)
DNA (858bp) protein (286aa)
3-hydroxybutyryl-CoA dehydrogenase; K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
3-hydroxybutyryl-CoA dehydrogenase; K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] id=14626066 bin=bin7_NC10_sister species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
3-hydroxybutyryl-CoA dehydrogenase
13_1_40cm_4_scaffold_1412_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3524..3841)
DNA (318bp) protein (106aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4741179 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1412_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3834..4358)
DNA (525bp) protein (175aa)
apt; adenine phosphoribosyltransferase (EC:2.4.2.7); K00759 adenine phosphoribosyltransferase [EC:2.4.2.7] Tax=GWA2_Rokubacteria_73_35_curated
Adenine phosphoribosyltransferase id=3474236 bin=GWA2_Methylomirabilis_73_35 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
adenine phosphoribosyltransferase
13_1_40cm_4_scaffold_1412_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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4586..4966
DNA (381bp) protein (127aa)
hypothetical protein id=3474240 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_1412_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5009..5752)
DNA (744bp) protein (248aa)
HAD family hydrolase; K07025 putative hydrolase of the HAD superfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative hydrolase (HAD superfamily) id=3474242 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
HAD family hydrolase
13_1_40cm_4_scaffold_1412_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5749..6525)
DNA (777bp) protein (259aa)
echA8_3; enoyl-CoA hydratase (EC:4.2.1.17) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
enoyl-CoA hydratase (EC:4.2.1.17)
Enoyl-CoA dehydratase, EchA8_3 id=3474245 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1412_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6525..6842)
DNA (318bp) protein (106aa)
rhodanese-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Rhodanese domain protein id=3474250 bin=GWA2_Methylomirabilis_73_35 species=Kingella denitrificans genus=Kingella taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
molybdopterin biosynthesis protein MoeB
13_1_40cm_4_scaffold_1412_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(6854..7705)
DNA (852bp) protein (284aa)
alpha/beta hydrolase fold protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Alpha/beta hydrolase fold protein id=3474252 bin=GWA2_Methylomirabilis_73_35 species=Verrucosispora maris genus=Verrucosispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alpha/beta hydrolase fold protein
13_1_40cm_4_scaffold_1412_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7731..8597)
DNA (867bp) protein (289aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14626058 bin=bin7_NC10_sister species=Thermus thermophilus genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_1412_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8683..10287)
DNA (1605bp) protein (535aa)
family 3 adenylate cyclase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Family 3 adenylate cyclase id=4845186 bin=GWC2_Methylomirabilis_70_16 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
family 3 adenylate cyclase
13_1_40cm_4_scaffold_1412_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10350..10589
DNA (240bp) protein (80aa)
cytoplasmic protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4894273 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytoplasmic protein
13_1_40cm_4_scaffold_1412_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10801..11448
DNA (648bp) protein (216aa)
Soluble lytic murein transglycosylase-like protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Soluble lytic murein transglycosylase-like protein id=4894272 bin=GWA2_Methylomirabilis_73_35 species=Selenomonas ruminantium genus=Selenomonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1412_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11605..11880)
DNA (276bp) protein (92aa)
transcriptional coactivator/pterin dehydratase; K01724 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1AAX6_THECD
transcriptional coactivator/pterin dehydratase
13_1_40cm_4_scaffold_1412_17
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11877..12443)
DNA (567bp) protein (189aa)
phosphohydrolase n=1 Tax=Variovorax paradoxus RepID=UPI000364C923
Uncharacterized protein {ECO:0000313|EMBL:CDX26363.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium pluri
putative gamma-butyrobetaine dioxygenase
13_1_40cm_4_scaffold_1412_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12440..13405)
DNA (966bp) protein (322aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=2995738 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1412_19
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

13860..14318
DNA (459bp) protein (153aa)
RNA polymerase sigma factor SigW; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=14626943 bin=bin7_NC10_sister species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
RNA polymerase sigma factor SigW; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=CSP1_6_Rokubacteria
RNA polymerase subunit sigma-24
13_1_40cm_4_scaffold_1412_20
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

14323..14991
DNA (669bp) protein (223aa)
methylated-DNA--protein-cysteine methyltransferase id=14626944 bin=bin7_NC10_sister species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
methylated-DNA--protein-cysteine methyltransferase Tax=CSP1_6_Rokubacteria
methylated-DNA-(protein)-cysteine S-methyltransferase
13_1_40cm_4_scaffold_1412_21
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

15358..16284
DNA (927bp) protein (309aa)
two component, sigma54 specific, Fis family transcriptional regulator id=14627680 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
two component, sigma54 specific, Fis family transcriptional regulator Tax=CSP1_6_Rokubacteria
two component sigma54 specific Fis family transcriptional regulator
13_1_40cm_4_scaffold_1412_22
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(16375..17013)
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00035E80A3
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:ETX08381.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus En
peptide ABC transporter ATP-binding protein
13_1_40cm_4_scaffold_1412_23
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17076..17318)
DNA (243bp) protein (81aa)
Peptide abc transporter substrate-binding protein n=1 Tax=Leptolyngbya sp. Heron Island J RepID=U9W8V8_9CYAN
Oligopeptide/dipeptide ABC transporter, ATPase subunit; K02032 peptide/nickel transport system ATP-binding protein Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
appF; oligopeptide ABC transporter ATP-binding protein
13_1_40cm_4_scaffold_1412_24
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17323..17859)
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI000365F9E0
oligopeptide/dipeptide ABC transporter, ATPase subunit; K02031 peptide/nickel transport system ATP-binding protein Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
Oligopeptide/dipeptide ABC transporter, ATPase subunit
Displaying 24 items

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