ggKbase home page

13_1_40cm_4_scaffold_1476

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1476_1
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

comp(422..1696)
DNA (1275bp) protein (425aa)
Uncharacterized protein n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6ASP8_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:CDI05478.1}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
peptidase, m36 (fungalysin) family
13_1_40cm_4_scaffold_1476_2
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(1783..2133)
DNA (351bp) protein (117aa)
PfkB family carbohydrate kinase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IM29_NITGG
sugar kinase, ribokinase
Sugar kinase, ribokinase {ECO:0000313|EMBL:AIF85158.1}; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nit
13_1_40cm_4_scaffold_1476_3
Nitrosopumilus maritimus, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(2773..4155)
DNA (1383bp) protein (461aa)
Thermosome n=1 Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A5Z5_NITMS
thermosome
Thermosome {ECO:0000313|EMBL:ABX13473.1}; TaxID=436308 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Nitrosopumilus maritimus (strain SCM1).;"
13_1_40cm_4_scaffold_1476_4
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(4457..6229)
DNA (1773bp) protein (591aa)
ade; Adenine deaminase (EC:3.5.4.2)
adenine deaminase id=14427280 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
adenine deaminase Tax=CSP1_1_Thaumarchaeota
13_1_40cm_4_scaffold_1476_5
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

6297..6575
DNA (279bp) protein (93aa)
50S ribosomal protein L44E n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AR66_9ARCH
50S ribosomal protein L44e {ECO:0000256|HAMAP-Rule:MF_01476}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
ribosomal protein L44E
13_1_40cm_4_scaffold_1476_6
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

6575..6772
DNA (198bp) protein (66aa)
30S ribosomal protein S27E id=14427282 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
30S ribosomal protein S27E Tax=CSP1_1_Thaumarchaeota
30S ribosomal protein S27E
13_1_40cm_4_scaffold_1476_7
uncultured marine crenarchaeote HF4000_APKG3J11, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(6755..7339)
DNA (585bp) protein (195aa)
Putative uncharacterized protein n=1 Tax=uncultured marine crenarchaeote HF4000_APKG3J11 RepID=B3T7V6_9ARCH
Putative uncharacterized protein {ECO:0000313|EMBL:ABZ08665.1}; TaxID=455587 species="Archaea; Thaumarchaeota; Nitrosopumilales; environmental samples.;" source="uncultured marine crenarchaeote HF4000
5-deoxyadenosylcobinamide phosphate nucleotidyltransferase
13_1_40cm_4_scaffold_1476_8

Not on your lists

comp(7336..8061)
DNA (726bp) protein (242aa)
cobalamin 5'-phosphate synthase; K02233 adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] id=14427284 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Adenosylcobinamide-GDP ribazoletransferase {ECO:0000256|HAMAP-Rule:MF_00719}; EC=2.7.8.26 {ECO:0000256|HAMAP-Rule:MF_00719};; Cobalamin synthase {ECO:0000256|HAMAP-Rule:MF_00719}; Cobalamin-5'-phospha
cobalamin 5'-phosphate synthase
13_1_40cm_4_scaffold_1476_9
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(8054..9046)
DNA (993bp) protein (331aa)
cobalamin biosynthesis protein CobD id=14427285 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
cobalamin biosynthesis protein CobD Tax=CSP1_1_Thaumarchaeota
cobD; putative cobalamin biosynthesis protein CobD
13_1_40cm_4_scaffold_1476_10
Candidatus Nitrosopumilus koreensis, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(9043..9888)
DNA (846bp) protein (282aa)
Probable cobyric acid synthase n=1 Tax=Candidatus Nitrosopumilus koreensis AR1 RepID=K0B5V7_9ARCH
cobyrinic acid ac-diamide synthase
Probable cobyric acid synthase {ECO:0000256|HAMAP-Rule:MF_00028}; TaxID=1229908 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumil
13_1_40cm_4_scaffold_1476_11
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(9885..10964)
DNA (1080bp) protein (360aa)
class I/II aminotransferase id=14427287 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
class I/II aminotransferase Tax=CSP1_1_Thaumarchaeota
class I/II aminotransferase
13_1_40cm_4_scaffold_1476_12
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

11047..12123
DNA (1077bp) protein (359aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|RuleBase:RU004501}; EC=1.2.1.11 {ECO:0000256|RuleBase:RU004501};; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" sourc
Aspartate-semialdehyde dehydrogenase n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AR02_9ARCH
asd; aspartate-semialdehyde dehydrogenase
13_1_40cm_4_scaffold_1476_13
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

12201..12659
DNA (459bp) protein (153aa)
Transcriptional regulator, AsnC family n=1 Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CYR1_9ARCH
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:EGP94455.1}; TaxID=1001994 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candida
putative HTH-type transcriptional regulator LrpA
13_1_40cm_4_scaffold_1476_14
uncultured marine crenarchaeote HF4000_APKG8D6, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

12692..13618
DNA (927bp) protein (309aa)
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:00
cyoE; protoheme IX farnesyltransferase (EC:2.5.1.-)
Protoheme IX farnesyltransferase n=1 Tax=uncultured marine crenarchaeote HF4000_APKG8D6 RepID=B3TA87_9ARCH
13_1_40cm_4_scaffold_1476_15
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(13630..14964)
DNA (1335bp) protein (445aa)
UbiD family decarboxylase id=14427298 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
UbiD family decarboxylase Tax=CSP1_1_Thaumarchaeota
UbiD family decarboxylase
13_1_40cm_4_scaffold_1476_16

Not on your lists

comp(14961..15299)
DNA (339bp) protein (113aa)
Uncharacterized protein {ECO:0000313|EMBL:AIF07766.1}; TaxID=1456101 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_24_H04.;"
hypothetical protein id=14427299 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
13_1_40cm_4_scaffold_1476_17
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

comp(15808..16422)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AUA2_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:CDI06401.1}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
hypothetical protein
13_1_40cm_4_scaffold_1476_18
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

comp(16524..16865)
DNA (342bp) protein (114aa)
Nascent polypeptide-associated complex protein n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AV96_9ARCH
Nascent polypeptide-associated complex protein {ECO:0000256|HAMAP-Rule:MF_00814}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
nac; Nascent polypeptide-associated complex protein
13_1_40cm_4_scaffold_1476_19
uncultured marine crenarchaeote HF4000_APKG8D6, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(16884..17342)
DNA (459bp) protein (153aa)
Putative PUA domain protein n=1 Tax=uncultured marine crenarchaeote HF4000_APKG8D6 RepID=B3TA75_9ARCH
Putative PUA domain protein {ECO:0000313|EMBL:ABZ09472.1}; TaxID=455602 species="Archaea; Thaumarchaeota; Nitrosopumilales; environmental samples.;" source="uncultured marine crenarchaeote HF4000_APKG
PUA domain-containing protein
13_1_40cm_4_scaffold_1476_20
Nitrosopumilus maritimus, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

17442..18485
DNA (1044bp) protein (348aa)
Phosphate uptake regulator, PhoU n=1 Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A622_NITMS
phosphate uptake regulator PhoU
Phosphate uptake regulator, PhoU {ECO:0000313|EMBL:ABX13500.1}; TaxID=436308 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Nitrosopumilus maritimus (
13_1_40cm_4_scaffold_1476_21
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

18512..19639
DNA (1128bp) protein (376aa)
GTP1/OBG protein n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AR25_9ARCH
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thauma
GTP1/OBG protein
13_1_40cm_4_scaffold_1476_22
Candidatus Nitrosopumilus koreensis, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

19629..20159
DNA (531bp) protein (177aa)
tRNA (cytidine(56)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00077}; EC=2.1.1.206 {ECO:0000256|HAMAP-Rule:MF_00077};; tRNA ribose 2'-O-methyltransferase aTrm56 {ECO:0000256|HAMAP-Rule:MF_0007
tRNA (cytidine(56)-2'-O)-methyltransferase n=2 Tax=Nitrosopumilaceae RepID=K0B9F3_9ARCH
hypothetical protein
13_1_40cm_4_scaffold_1476_23
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

20184..20693
DNA (510bp) protein (170aa)
Transcription factor E n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AQW9_9ARCH
Transcription factor E {ECO:0000256|HAMAP-Rule:MF_01909, ECO:0000256|SAAS:SAAS00008967}; Short=TFE {ECO:0000256|HAMAP-Rule:MF_01909};; TFIIE subunit alpha homolog {ECO:0000256|HAMAP-Rule:MF_01909}; Tr
tfe; Transcription factor E
13_1_40cm_4_scaffold_1476_24

Not on your lists

comp(20690..21340)
DNA (651bp) protein (217aa)
Deaminase-reductase domain-containing protein (RIB7, arfC) {ECO:0000313|EMBL:AIF02568.1}; EC=1.1.1.302 {ECO:0000313|EMBL:AIF02568.1};; TaxID=1456023 species="Archaea; Thaumarchaeota; environmental sam
ribD; 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase (EC:1.1.1.302)
Putative RibD C-terminal domain protein n=1 Tax=uncultured marine crenarchaeote HF4000_APKG8D6 RepID=B3TA70_9ARCH
13_1_40cm_4_scaffold_1476_25
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(21327..22517)
DNA (1191bp) protein (397aa)
amidohydrolase id=14427314 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
amidohydrolase Tax=CSP1_1_Thaumarchaeota
Amidohydrolase
13_1_40cm_4_scaffold_1476_26

Not on your lists

comp(22511..22675)
DNA (165bp) protein (55aa)
GTP cyclohydrolase III {ECO:0000256|HAMAP-Rule:MF_00608}; EC=3.5.4.29 {ECO:0000256|HAMAP-Rule:MF_00608};; TaxID=1456023 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured ma
gch; GTP cyclohydrolase III (EC:3.5.4.29)
hypothetical protein n=2 Tax=cellular organisms RepID=UPI000369E84C
Displaying 26 items

View Taxonomy