ggKbase home page

13_1_40cm_4_scaffold_1481

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1481_1
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

2..292
DNA (291bp) protein (97aa)
pdaD; pyruvoyl-dependent arginine decarboxylase; K02626 arginine decarboxylase [EC:4.1.1.19] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
pyruvoyl-dependent arginine decarboxylase 2 (EC:4.1.1.19)
Pyruvoyl-dependent arginine decarboxylase n=1 Tax=Cenarchaeum symbiosum (strain A) RepID=A0RUV5_CENSY
13_1_40cm_4_scaffold_1481_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

253..1005
DNA (753bp) protein (251aa)
ccdA; cytochrome c-type biogenesis protein CcdA (EC:1.8.-.-); K06196 cytochrome c-type biogenesis protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ccdA; cytochrome c-type biogenesis protein CcdA (EC:1.8.-.-)
Cytochrome c-type biogenesis protein CcdA n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6W2_GEMAT
13_1_40cm_4_scaffold_1481_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

1224..2003
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6W4_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_4_scaffold_1481_4
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(2014..3885)
DNA (1872bp) protein (624aa)
Gamma-glutamyltranspeptidase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6W5_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
gamma-glutamyltransferase
13_1_40cm_4_scaffold_1481_5
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

3898..4833
DNA (936bp) protein (312aa)
hypothetical protein; K07106 N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
N-acetylmuramic acid 6-phosphate etherase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6W7_GEMAT
N-acetylmuramic acid 6-phosphate etherase
13_1_40cm_4_scaffold_1481_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

4830..5951
DNA (1122bp) protein (374aa)
anmK; anhydro-N-acetylmuramic acid kinase; K09001 anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Anhydro-N-acetylmuramic acid kinase n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L4J5_THERP id=5224368 bin=16ft_combo_ws3_JS1 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Anhydro-N-acetylmuramic acid kinase
13_1_40cm_4_scaffold_1481_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

5948..7381
DNA (1434bp) protein (478aa)
glycosidase (EC:3.2.1.-); K05349 beta-glucosidase [EC:3.2.1.21] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Glycosidase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6W9_GEMAT
glycoside hydrolase family 3 domain protein
13_1_40cm_4_scaffold_1481_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(7438..8865)
DNA (1428bp) protein (476aa)
hypothetical protein n=1 Tax=Methylocystis parvus RepID=UPI0003113AA4
FHA domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
FHA domain-containing protein
13_1_40cm_4_scaffold_1481_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(8862..9893)
DNA (1032bp) protein (344aa)
putative serine/threonine protein phosphatase (EC:3.1.3.16); K01090 protein phosphatase [EC:3.1.3.16] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
putative serine/threonine protein phosphatase (EC:3.1.3.16)
Putative serine/threonine protein phosphatase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6X0_GEMAT
13_1_40cm_4_scaffold_1481_10
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(9896..11425)
DNA (1530bp) protein (510aa)
putative serine/threonine protein kinase (EC:2.7.11.1); K08884 serine/threonine protein kinase, bacterial [EC:2.7.11.1] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Putative serine/threonine protein kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEH9_GEMAT
protein kinase
13_1_40cm_4_scaffold_1481_11
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(11422..12066)
DNA (645bp) protein (215aa)
FHA domain protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FQY3_SORC5
FHA domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
FHA domain-containing protein
13_1_40cm_4_scaffold_1481_12
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

12806..14527
DNA (1722bp) protein (574aa)
putative N-acetylmuramoyl-L-alanine amidase; K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Putative N-acetylmuramoyl-L-alanine amidase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6X1_GEMAT
cell wall hydrolase/autolysin
13_1_40cm_4_scaffold_1481_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

14530..17406
DNA (2877bp) protein (959aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6X2_GEMAT
WD40-like beta Propeller containing protein
WD40-like beta Propeller containing protein {ECO:0000313|EMBL:AHG90382.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_1481_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

17481..19349
DNA (1869bp) protein (623aa)
putative serine/threonine protein kinase; K11912 serine/threonine-protein kinase PpkA [EC:2.7.11.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
serine/threonine protein kinase n=1 Tax=Candidatus Latescibacter anaerobius SCGC AAA252-E07 RepID=UPI0003B765FC
protein kinase
13_1_40cm_4_scaffold_1481_15
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

19313..19858
DNA (546bp) protein (182aa)
Isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DKR7_SINAD
carbonic anhydrase/acetyltransferase Tax=RBG_16_Gemmatimonadetes_66_8_curated
carbonic anhydrase/acetyltransferase
13_1_40cm_4_scaffold_1481_16
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

20025..21668
DNA (1644bp) protein (548aa)
nrdJ; ribonucleotide-diphosphate reductase subunit alpha (EC:1.17.4.1); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Ribonucleoside-diphosphate reductase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6X4_GEMAT
ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
13_1_40cm_4_scaffold_1481_17
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

21692..22483
DNA (792bp) protein (264aa)
nrdJ; ribonucleotide-diphosphate reductase subunit alpha (EC:1.17.4.1); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Ribonucleoside-diphosphate reductase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6X4_GEMAT
ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
13_1_40cm_4_scaffold_1481_18
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

22641..23009
DNA (369bp) protein (123aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_4_scaffold_1481_19
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

comp(23087..23665)
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XDG1_NAKMY
hypothetical protein Tax=RBG_16_Chloroflexi_63_12_curated
hypothetical protein
13_1_40cm_4_scaffold_1481_20
unknown

Not on your lists

23711..24076
DNA (366bp) protein (122aa)

This feature has no annotations

13_1_40cm_4_scaffold_1481_21
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24216..24677
DNA (462bp) protein (154aa)
Transcriptional regulator, MarR family n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RRL2_LEIAQ
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ERK71209.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14
Transcriptional regulator, MarR family
13_1_40cm_4_scaffold_1481_22
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

24888..26342
DNA (1455bp) protein (485aa)
pykA; pyruvate kinase (EC:2.7.1.40); K00873 pyruvate kinase [EC:2.7.1.40] Tax=RBG_16_Gemmatimonadetes_66_8_curated
pykA; pyruvate kinase (EC:2.7.1.40)
Pyruvate kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7D6_GEMAT
13_1_40cm_4_scaffold_1481_23
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

26344..27123
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7D7_GEMAT
hypothetical protein; K06167 PhnP protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
beta-lactamase domain protein
13_1_40cm_4_scaffold_1481_24
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

27150..28493
DNA (1344bp) protein (448aa)
Putative fructose-bisphosphate aldolase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7D9_GEMAT
putative fructose-bisphosphate aldolase Tax=RBG_16_Gemmatimonadetes_66_8_curated
ketose-bisphosphate aldolase class-II
13_1_40cm_4_scaffold_1481_25
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

28490..28798
DNA (309bp) protein (103aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_4_scaffold_1481_26
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

28795..29685
DNA (891bp) protein (297aa)
tRNA-processing ribonuclease BN n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7E1_GEMAT
membrane protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ribonuclease BN
13_1_40cm_4_scaffold_1481_27
unknown

Not on your lists

29795..29860
DNA (66bp) protein (22aa)

This feature has no annotations

Displaying 27 items

View Taxonomy