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13_1_40cm_4_scaffold_1540

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1540_1
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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2..661
DNA (660bp) protein (220aa)
Putative transposase, IS605 OrfB family n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFZ7_NITGG
putative transposase IS605 OrfB family
Putative transposase IS605 OrfB family {ECO:0000313|EMBL:AIC15978.1}; TaxID=926571 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="N
13_1_40cm_4_scaffold_1540_2
RBG_13_Bathyarchaeota_52_12_curated, Bathyarchaeota, Archaea

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813..2048
DNA (1236bp) protein (412aa)
aspC; aspartyl-tRNA synthetase (EC:6.1.1.12)
Aspartate--tRNA ligase n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=SYD_METKA
aspartyl-tRNA synthetase Tax=RBG_13_Bathyarchaeota_52_12_curated
13_1_40cm_4_scaffold_1540_3
RBG_16_Archaea_50_20_curated, Archaea

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2347..3540
DNA (1194bp) protein (398aa)
hypothetical protein
Tax=RBG_16_Archaea_50_20_curated
13_1_40cm_4_scaffold_1540_4
RBG_16_Archaea_50_20_curated, Archaea

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comp(3597..4790)
DNA (1194bp) protein (398aa)
Transcriptional regulator n=1 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7T8Y9_9ARCH
Tax=RBG_16_Archaea_50_20_curated
13_1_40cm_4_scaffold_1540_5
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(5056..5886)
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJ57_NITGG
hypothetical protein withCobQ/CobB/MinD/ParA nucleotide binding domain
Uncharacterized protein {ECO:0000313|EMBL:AFU59138.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera
13_1_40cm_4_scaffold_1540_6
unknown

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comp(6172..6351)
DNA (180bp) protein (60aa)

This feature has no annotations

13_1_40cm_4_scaffold_1540_7
Pelotomaculum thermopropionicum, Pelotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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6530..8005
DNA (1476bp) protein (492aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=370438 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Pelotomaculum.;" s
Pyruvate kinase n=1 Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D051_PELTS
PykF; pyruvate kinase
13_1_40cm_4_scaffold_1540_8
Pyrolobus fumarii, Pyrolobus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

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8061..8471
DNA (411bp) protein (137aa)
50S ribosomal protein L18e n=1 Tax=Pyrolobus fumarii (strain DSM 11204 / 1A) RepID=G0EF27_PYRF1
50S ribosomal protein L18e
50S ribosomal protein L18e {ECO:0000256|HAMAP-Rule:MF_00329}; TaxID=694429 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Pyrodictiaceae; Pyrolobus.;" source="Pyrolobus fumarii (str
13_1_40cm_4_scaffold_1540_9
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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8674..9285
DNA (612bp) protein (204aa)
Putative amino acid transporter n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0II90_NITGG
multiple antibiotic transporter
UPF0056 membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus N
13_1_40cm_4_scaffold_1540_10
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(9307..9660)
DNA (354bp) protein (118aa)
Large-conductance mechanosensitive channel n=1 Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CW67_9ARCH
Large-conductance mechanosensitive channel {ECO:0000313|EMBL:EGP93519.1}; TaxID=1001994 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Can
mscL; large-conductance mechanosensitive ion channel
13_1_40cm_4_scaffold_1540_11
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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comp(9805..10824)
DNA (1020bp) protein (340aa)
Tax=RBG_13_Bathyarchaeota_46_16b_curated
13_1_40cm_4_scaffold_1540_12
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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comp(11013..11591)
DNA (579bp) protein (193aa)
Tax=RBG_13_Bathyarchaeota_46_16b_curated
13_1_40cm_4_scaffold_1540_13
unknown

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comp(11595..12260)
DNA (666bp) protein (222aa)

This feature has no annotations

13_1_40cm_4_scaffold_1540_14
unknown

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comp(12293..12508)
DNA (216bp) protein (72aa)

This feature has no annotations

13_1_40cm_4_scaffold_1540_15
BJP_IG2157_Anaerolineales_55_23, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

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12850..13623
DNA (774bp) protein (258aa)
Fe-S cluster assembly ATP-binding protein SufC n=1 Tax=uncultured Chloroflexi bacterium RepID=H5SPH1_9CHLR
FeS assembly ATPase SufC
Tax=BJP_IG2157_Anaerolineales_55_23
13_1_40cm_4_scaffold_1540_16
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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13877..15343
DNA (1467bp) protein (489aa)
sufS; cysteine desulfurase/selenocysteine lyase (EC:2.8.1.7)
Cysteine desulfurase/selenocysteine lyase {ECO:0000313|EMBL:AIC15479.1}; EC=2.8.1.7 {ECO:0000313|EMBL:AIC15479.1};; TaxID=926571 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; N
Cysteine desulfurase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMM7_NITGG
13_1_40cm_4_scaffold_1540_17
RBG_16_Archaea_50_20_curated, Archaea

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15340..15750
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=unclassified Crenarchaeota (miscellaneous) RepID=UPI00037EECBB
nifU; SUF system FeS cluster assembly protein Tax=RBG_16_Archaea_50_20_curated
NifU family SUF system FeS assembly protein
13_1_40cm_4_scaffold_1540_18
unknown

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comp(15779..17368)
DNA (1590bp) protein (530aa)

This feature has no annotations

13_1_40cm_4_scaffold_1540_19
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

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comp(17544..17864)
DNA (321bp) protein (107aa)
Rieske (2Fe-2S) iron-sulfur domain-containing protein; K05710 dioxygenase ferredoxin subunit id=14630406 bin=bin8_Chloro species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin8_Chloro organism_group=Chloroflexi
Rieske (2Fe-2S) iron-sulfur domain-containing protein; K05710 dioxygenase ferredoxin subunit Tax=CSP1_4_Chloroflexi
dioxygenase ferredoxin protein
13_1_40cm_4_scaffold_1540_20
RBG_16_Archaea_50_20_curated, Archaea

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comp(17864..19285)
DNA (1422bp) protein (474aa)
FeS assembly protein SufD n=1 Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BBD9_9ARCH
sufD; FeS cluster assembly protein sufD Tax=RBG_16_Archaea_50_20_curated
FeS assembly protein SufD
13_1_40cm_4_scaffold_1540_21
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(19342..20742)
DNA (1401bp) protein (467aa)
FeS cluster assembly protein SufB n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I9N0_NITGG
sufB; FeS cluster assembly protein SufB
FeS cluster assembly protein SufB {ECO:0000313|EMBL:AIC15476.1}; TaxID=926571 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitros
13_1_40cm_4_scaffold_1540_22
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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comp(21244..21960)
DNA (717bp) protein (239aa)
nth; endonuclease III (EC:4.2.99.18); K10773 endonuclease III [EC:4.2.99.18] Tax=RBG_16_Euryarchaeota_68_13_curated
nth; endonuclease III (EC:4.2.99.18)
Endonuclease III n=1 Tax=Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg) RepID=D9PX04_METTM
13_1_40cm_4_scaffold_1540_23

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comp(21957..23927)
DNA (1971bp) protein (657aa)
Probable endonuclease 4 {ECO:0000256|HAMAP-Rule:MF_00152}; EC=3.1.21.2 {ECO:0000256|HAMAP-Rule:MF_00152};; Endodeoxyribonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; Endonuclease IV {ECO:0000256|HAMA
apurinic endonuclease Apn1 (EC:3.1.21.2)
Probable endonuclease 4 n=1 Tax=uncultured archaeon RepID=G9BY71_9ARCH
13_1_40cm_4_scaffold_1540_24
unknown

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comp(24060..24317)
DNA (258bp) protein (86aa)

This feature has no annotations

Displaying 24 items

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