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13_1_40cm_4_scaffold_1559

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1559_1
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(3..818)
DNA (816bp) protein (272aa)
hmgA-1; hydroxymethylglutaryl-CoA reductase, degradative (EC:1.1.1.34 1.1.1.88); K00054 hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88] Tax=RBG_16_Archaea_50_20_curated
3-hydroxy-3-methylglutaryl-coenzyme A reductase n=1 Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0BN62_9EURY
3-hydroxy-3-methylglutaryl-coenzyme A reductase
13_1_40cm_4_scaffold_1559_2
GWF2_TM6_30_66, TM6, Bacteria

Not on your lists

comp(874..1407)
DNA (534bp) protein (178aa)
isopentenyl-diphosphate delta-isomerase n=1 Tax=Psychroflexus tropicus RepID=UPI0003607374
Isopentenyl-diphosphate Delta-isomerase {ECO:0000313|EMBL:KKP29630.1}; TaxID=1619078 species="Bacteria; candidate division TM6.;" source="candidate division TM6 bacterium GW2011_GWF2_30_66.;"
isopentenyl-diphosphate delta-isomerase Idi
13_1_40cm_4_scaffold_1559_3
Thermofilum pendens, Thermofilum, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

1613..3352
DNA (1740bp) protein (580aa)
Extracellular ligand-binding receptor n=1 Tax=Thermofilum pendens (strain Hrk 5) RepID=A1RWX5_THEPD
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ABL77705.1}; TaxID=368408 species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermofilaceae; Thermofilum.;" source="Thermofilum pen
extracellular ligand-binding receptor
13_1_40cm_4_scaffold_1559_4
Spirochaeta thermophila, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(3459..3947)
DNA (489bp) protein (163aa)
NUDIX hydrolase n=1 Tax=Spirochaeta thermophila (strain ATCC 700085 / DSM 6578 / Z-1203) RepID=G0GF00_SPITZ
NUDIX hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:AEJ62344.1}; TaxID=869211 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta thermophila (strain ATCC 700085 / DSM 6
13_1_40cm_4_scaffold_1559_5
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(4043..4936)
DNA (894bp) protein (298aa)
mevalonate kinase (EC:2.7.1.36)
mevalonate kinase n=1 Tax=Actinobaculum urinale RepID=UPI0003B76D7A
hypothetical protein Tax=RBG_13_Bathyarchaeota_38_9_curated
13_1_40cm_4_scaffold_1559_6
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(5046..5894)
DNA (849bp) protein (283aa)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00037B975A
dioxygenase; K06990 Tax=RBG_13_Bathyarchaeota_46_16b_curated
hypothetical protein
13_1_40cm_4_scaffold_1559_7
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(5891..6568)
DNA (678bp) protein (226aa)
30S ribosomal protein S2 n=4 Tax=Methanobrevibacter RepID=RS2_METS3
rps2P; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=RBG_16_Archaea_50_20_curated
rps2P; 30S ribosomal protein S2
13_1_40cm_4_scaffold_1559_8
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(6581..6859)
DNA (279bp) protein (93aa)
DNA-directed RNA polymerase subunit N n=1 Tax=Acidianus hospitalis (strain W1) RepID=F4B761_ACIHW
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
RNA polymerase subunit N
13_1_40cm_4_scaffold_1559_9
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(6816..7226)
DNA (411bp) protein (137aa)
30S ribosomal protein S9 n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D7I1_METSW
rps9p; ribosomal protein S9P Rps9p; K02996 small subunit ribosomal protein S9 Tax=RBG_16_Archaea_50_20_curated
30S ribosomal protein S9
13_1_40cm_4_scaffold_1559_10
Pyrococcus sp. NA2, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists


comp(7223..7681)
DNA (459bp) protein (153aa)
50S ribosomal protein L13 n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HJ17_PYRSN
50S ribosomal protein L13P
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366}; TaxID=342949 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus sp. (strain NA
13_1_40cm_4_scaffold_1559_11
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(7678..8313)
DNA (636bp) protein (212aa)
rpoD; DNA-directed RNA polymerase subunit D; K03047 DNA-directed RNA polymerase subunit D [EC:2.7.7.6] Tax=RBG_16_Archaea_50_20_curated
RNA polymerase insert n=1 Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BB81_9ARCH
RNA polymerase insert
13_1_40cm_4_scaffold_1559_12
unknown

Not on your lists

comp(8554..9012)
DNA (459bp) protein (153aa)

This feature has no annotations

13_1_40cm_4_scaffold_1559_13
RBG_16_Archaea_50_20_curated, Archaea

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comp(9128..9823)
DNA (696bp) protein (232aa)
30S ribosomal protein S4 n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HJ21_PYRSN
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RBG_16_Archaea_50_20_curated
30S ribosomal protein S4
13_1_40cm_4_scaffold_1559_14
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(9838..10338)
DNA (501bp) protein (167aa)
30S ribosomal protein S13 n=1 Tax=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) RepID=RS13_STAMF
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RBG_16_Archaea_50_20_curated
rps13p; 30S ribosomal protein S13
13_1_40cm_4_scaffold_1559_15
CG_Micra_05, Micraarchaeota, Archaea

Not on your lists

10901..11365
DNA (465bp) protein (155aa)
S-adenosylmethionine decarboxylase proenzyme; K01611 S-adenosylmethionine decarboxylase [EC:4.1.1.50] Tax=CG_Micra_05
S-adenosylmethionine decarboxylase proenzyme (AdoMetDC)(SamDC) (EC:4.1.1.50)
S-adenosylmethionine decarboxylase proenzyme (AdoMetDC)(SamDC) n=1 Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=B5YF21_DICT6
13_1_40cm_4_scaffold_1559_16
unknown

Not on your lists

11526..11792
DNA (267bp) protein (89aa)

This feature has no annotations

13_1_40cm_4_scaffold_1559_17
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

11963..12814
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=unclassified Crenarchaeota (miscellaneous) RepID=UPI00035E799E
peptidase M50
Putative peptidase M50 {ECO:0000313|EMBL:AFU58271.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera g
13_1_40cm_4_scaffold_1559_18
Methanopyrus kandleri, Methanopyrus, Methanopyrales, Methanopyri, Euryarchaeota, Archaea

Not on your lists

comp(12975..13757)
DNA (783bp) protein (261aa)
Probable tRNA pseudouridine synthase B {ECO:0000255|HAMAP-Rule:MF_01081}; EC=5.4.99.25 {ECO:0000255|HAMAP-Rule:MF_01081};; tRNA pseudouridine(55) synthase {ECO:0000255|HAMAP-Rule:MF_01081}; Short=Psi5
Probable tRNA pseudouridine synthase B n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=TRUB_METKA
TruB; H/ACA RNA-protein complex component Cbf5p
13_1_40cm_4_scaffold_1559_19
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(14118..14414)
DNA (297bp) protein (99aa)
50S ribosomal protein L14e n=1 Tax=Thermosphaera aggregans (strain DSM 11486 / M11TL) RepID=D5U1Z7_THEAM
50S ribosomal protein L14e; K02875 large subunit ribosomal protein L14e Tax=RBG_16_Archaea_50_20_curated
50S ribosomal protein L14
13_1_40cm_4_scaffold_1559_20
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(14458..15171)
DNA (714bp) protein (238aa)
cytidylate kinase (EC:2.7.4.14); K00945 cytidylate kinase [EC:2.7.4.14] Tax=RBG_13_Bathyarchaeota_38_9_curated
cmk; cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase n=1 Tax=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) RepID=KCY_AERPE
13_1_40cm_4_scaffold_1559_21
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(15284..15868)
DNA (585bp) protein (195aa)
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
13_1_40cm_4_scaffold_1559_22
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(15870..16454)
DNA (585bp) protein (195aa)
adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3] Tax=RBG_16_Archaea_50_20_curated
adkA; adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=1 Tax=Aeropyrum camini SY1 = JCM 12091 RepID=U3T9E3_9CREN
13_1_40cm_4_scaffold_1559_23
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(16519..17550)
DNA (1032bp) protein (344aa)
Protein translocase subunit SecY n=1 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7U2G8_9ARCH
hypothetical protein; K10956 protein transport protein SEC61 subunit alpha Tax=RBG_16_Archaea_50_20_curated
preprotein translocase subunit SecY
Displaying 23 items

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