ggKbase home page

13_1_40cm_4_scaffold_1606

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1606_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3..1499)
DNA (1497bp) protein (499aa)
long-chain fatty acid CoA ligase (AMP-binding) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
AMP-dependent synthetase and ligase id=2278568 bin=GWA2_Elusimicrobia_69_24 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
AMP-dependent synthetase/ligase
13_1_40cm_4_scaffold_1606_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

1680..2126
DNA (447bp) protein (149aa)
id=14626096 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
id=14626096 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
13_1_40cm_4_scaffold_1606_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2131..2625)
DNA (495bp) protein (165aa)
polyhydroxyalkanoate synthesis repressor PhaR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Polyhydroxyalkanoate synthesis repressor PhaR id=2278566 bin=GWA2_Elusimicrobia_69_24 species=Sphingobium sp. SYK-6 genus=Sphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
polyhydroxyalkanoate synthesis repressor PhaR
13_1_40cm_4_scaffold_1606_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

2743..3486
DNA (744bp) protein (248aa)
3-oxoacyl-ACP reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
3-oxoacyl-(acyl-carrier-protein) reductase id=14626098 bin=bin7_NC10_sister species=Phascolarctobacterium succinatutens genus=Phascolarctobacterium taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
3-oxoacyl-(acyl-carrier-protein) reductase
13_1_40cm_4_scaffold_1606_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3464..3775)
DNA (312bp) protein (104aa)
acyl dehydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Acyl dehydratase id=3479315 bin=GWC2_Methylomirabilis_70_16 species=Caulobacter sp. genus=Caulobacter taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
dehydratase
13_1_40cm_4_scaffold_1606_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4521..5639)
DNA (1119bp) protein (373aa)
poly(R)-hydroxyalkanoic acid synthase subunit PhaC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
poly(R)-hydroxyalkanoic acid synthase subunit PhaC id=14626101 bin=bin7_NC10_sister species=Aneurinibacillus aneurinilyticus genus=Aneurinibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
poly(R)-hydroxyalkanoic acid synthase subunit PhaC
13_1_40cm_4_scaffold_1606_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5662..5982)
DNA (321bp) protein (107aa)
sterol-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative sterol carrier protein id=4320175 bin=GWC2_Methylomirabilis_70_24 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
sterol-binding protein
13_1_40cm_4_scaffold_1606_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(6052..6801)
DNA (750bp) protein (250aa)
dehydrogenase/reductase 11 (EC:1.1.1.-); K00100 [EC:1.1.1.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Probable oxidoreductase (Short-chain dehydrogenase family) id=4117790 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Natrialba taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short-chain dehydrogenase/reductase SDR
13_1_40cm_4_scaffold_1606_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(6803..7576)
DNA (774bp) protein (258aa)
enoyl-CoA hydratase/carnithine racemase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Enoyl-CoA hydratase/isomerase id=1890904 bin=GWA2_Methylomirabilis_73_35 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
enoyl-CoA hydratase/isomerase
13_1_40cm_4_scaffold_1606_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7566..8153)
DNA (588bp) protein (196aa)
TetR family transcriptional regulator; K13770 TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcriptional regulator, TetR family id=1890906 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulator
13_1_40cm_4_scaffold_1606_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8231..9562)
DNA (1332bp) protein (444aa)
amidohydrolase Tax=GWA2_Rokubacteria_73_35_curated
Amidohydrolase id=4800307 bin=GWC2_Methylomirabilis_70_16 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amidohydrolase
13_1_40cm_4_scaffold_1606_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9693..12266
DNA (2574bp) protein (858aa)
hypothetical protein; K06890 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Thiamine pyrophosphate enzyme id=2783151 bin=GWF2_Methylomirabilis_70_14 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiamine pyrophosphate enzyme
13_1_40cm_4_scaffold_1606_13
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(12306..13307)
DNA (1002bp) protein (334aa)
threonine dehydratase (EC:4.3.1.19); K01754 threonine dehydratase [EC:4.3.1.19] id=14626116 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
threonine dehydratase (EC:4.3.1.19); K01754 threonine dehydratase [EC:4.3.1.19] Tax=CSP1_6_Rokubacteria
threonine dehydratase (EC:4.3.1.19)
13_1_40cm_4_scaffold_1606_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13342..14304
DNA (963bp) protein (321aa)
putative signal peptide peptidase SppA (EC:3.4.21.-); K04773 protease IV [EC:3.4.21.-] Tax=GWA2_Rokubacteria_73_35_curated
putative signal peptide peptidase SppA (EC:3.4.21.-)
Putative Signal peptide peptidase SppA id=3526411 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_1606_15
BJP_IG2069_Chloroflexi_70_12, Chloroflexi, Bacteria

Not on your lists

comp(14286..14480)
DNA (195bp) protein (65aa)
hypothetical protein id=24596142 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Catenulispora acidiphila genus=Catenulispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=BJP_IG2069_Chloroflexi_70_12
13_1_40cm_4_scaffold_1606_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14477..15052)
DNA (576bp) protein (192aa)
Coenzyme A pyrophosphatase id=1890929 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
coenzyme A pyrophosphatase Tax=GWA2_Rokubacteria_73_35_curated
coenzyme A pyrophosphatase
13_1_40cm_4_scaffold_1606_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15081..15866)
DNA (786bp) protein (262aa)
oxidoreductase (EC:1.-.-.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative oxidoreductase id=1890936 bin=GWA2_Methylomirabilis_73_35 species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short chain dehydrogenase family protein
13_1_40cm_4_scaffold_1606_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(15909..16670)
DNA (762bp) protein (254aa)
sir2 family protein; K12410 NAD-dependent deacetylase [EC:3.5.1.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
sat:SYN_01020 Sir2 family NAD-dependent deacetylase; K12410 NAD-dependent deacetylase [EC:3.5.1.-] id=1241516 bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
sir2 family protein
13_1_40cm_4_scaffold_1606_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16728..17519)
DNA (792bp) protein (264aa)
abortive infection protein; K07052 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Abortive infection protein id=1890947 bin=GWA2_Methylomirabilis_73_35 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
abortive infection protein
13_1_40cm_4_scaffold_1606_20
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(17512..18939)
DNA (1428bp) protein (476aa)
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=GWC2_Rokubacteria_70_16_curated
Amidase id=3014927 bin=GWC2_Methylomirabilis_70_16 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amidase
13_1_40cm_4_scaffold_1606_21
unknown

Not on your lists

comp(18932..19084)
DNA (153bp) protein (51aa)

This feature has no annotations

13_1_40cm_4_scaffold_1606_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(19103..19948)
DNA (846bp) protein (282aa)
rluD_3; ribosomal large subunit pseudouridine synthase D; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Ribosomal large subunit pseudouridine synthase D (EC:4.2.1.70)
RNA pseudouridylate synthase id=1890952 bin=GWA2_Methylomirabilis_73_35 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1606_23
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20050..20829
DNA (780bp) protein (260aa)
two-component hybrid histidine kinase (EC:2.7.3.-)
Putative PAS/PAC sensor protein n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XQ40_9BACT
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
13_1_40cm_4_scaffold_1606_24
unknown

Not on your lists

20965..21165
DNA (201bp) protein (67aa)

This feature has no annotations

13_1_40cm_4_scaffold_1606_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

21352..21768
DNA (417bp) protein (139aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=4020045 bin=GWA2_Methylomirabilis_73_35 species=Streptomyces himastatinicus genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Fis family transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
chemotaxis protein CheY
Displaying 25 items

View Taxonomy