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13_1_40cm_4_scaffold_1638

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Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1638_1
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..125)
DNA (123bp) protein (41aa)
oppF; oligopeptide ABC transporter ATP-binding protein (EC:3.6.3.27); K02032 peptide/nickel transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
Oligopeptide/dipeptide ABC transporter, ATP-binding protein id=4621969 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide/dipeptide ABC transporter ATPase; K02032 peptide/nickel transport system ATP-binding protein
13_1_40cm_4_scaffold_1638_2
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(139..945)
DNA (807bp) protein (269aa)
Oligopeptide ABC transporter ATP-binding protein id=4621968 bin=GWA2_Methylomirabilis_73_35 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide/dipeptide ABC transporter ATPase; K02031 peptide/nickel transport system ATP-binding protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
oligopeptide ABC transporter ATP-binding protein
13_1_40cm_4_scaffold_1638_3
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1067..1969)
DNA (903bp) protein (301aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component id=4621967 bin=GWA2_Methylomirabilis_73_35 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
h16_A2951; ABC transporter permease; K02034 peptide/nickel transport system permease protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
dppC4; dipeptide transport system permease DppC
13_1_40cm_4_scaffold_1638_4
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1978..2898)
DNA (921bp) protein (307aa)
nickel-transporting ATPase (EC:3.6.3.24); K02033 peptide/nickel transport system permease protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
ABC transporter permease id=4621966 bin=GWA2_Methylomirabilis_73_35 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gsiC4; glutathione ABC transporter permease GsiC
13_1_40cm_4_scaffold_1638_5
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

3053..4504
DNA (1452bp) protein (484aa)
acyltransferase domain-containing protein Tax=CSP1_6_Rokubacteria
acyltransferase domain-containing protein id=14627706 bin=bin7_NC10_sister species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
acyltransferase domain-containing protein
13_1_40cm_4_scaffold_1638_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4501..5463)
DNA (963bp) protein (321aa)
Lactate dehydrogenase-related dehydrogenase (EC:1.1.1.26)
D-isomer specific 2-hydroxyacid dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
2-hydroxyacid dehydrogenase, putative id=4935483 bin=GWC2_Methylomirabilis_70_24 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_4_scaffold_1638_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(5564..6796)
DNA (1233bp) protein (411aa)
Putative uncharacterized protein id=3526204 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
protein of unknown function DUF1501
13_1_40cm_4_scaffold_1638_8
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(6932..8584)
DNA (1653bp) protein (551aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative uncharacterized protein id=3526206 bin=GWC2_Methylomirabilis_70_16 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_1638_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8607..9200)
DNA (594bp) protein (198aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=4367554 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1638_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9197..9469)
DNA (273bp) protein (91aa)
hypothetical protein id=4367555 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_1638_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9471..9953)
DNA (483bp) protein (161aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=4367556 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1638_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9955..10518)
DNA (564bp) protein (188aa)
rpoE; RNA polymerase, sigma-E factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
RNA polymerase, sigma-24 subunit, ECF subfamily id=4367557 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ECF subfamily RNA polymerase sigma-24 subunit
13_1_40cm_4_scaffold_1638_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10722..11435)
DNA (714bp) protein (238aa)
Short-chain dehydrogenase/reductase SDR id=4367560 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short-chain dehydrogenase/reductase SDR Tax=GWA2_Rokubacteria_73_35_curated
short-chain dehydrogenase/reductase SDR
13_1_40cm_4_scaffold_1638_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11432..12322)
DNA (891bp) protein (297aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ParB domain protein nuclease id=4367561 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1638_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12376..12984)
DNA (609bp) protein (203aa)
Thiol methyltransferase 1-like id=4367562 bin=GWA2_Methylomirabilis_73_35 species=Synechococcus elongatus genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiol methyltransferase 1-like protein Tax=GWA2_Rokubacteria_73_35_curated
thiol methyltransferase 1
13_1_40cm_4_scaffold_1638_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12972..13610)
DNA (639bp) protein (213aa)
Beta-phosphoglucomutase id=4367563 bin=GWA2_Methylomirabilis_73_35 species=Myxococcus sp. (contaminant ex DSM 436) genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
HAD family hydrolase Tax=GWA2_Rokubacteria_73_35_curated
HAD family hydrolase
13_1_40cm_4_scaffold_1638_17
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(13912..14541)
DNA (630bp) protein (210aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
UPF0637 protein HMPREF1013_00496 id=4622868 bin=GWC2_Methylomirabilis_70_24 species=Bacillus sp. 2_A_57_CT2 genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_40cm_4_scaffold_1638_18
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(14660..15637)
DNA (978bp) protein (326aa)
Glycosyl transferase, family 2 n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5V1M6_ROSS1
glycosyl transferase family protein
Glycosyl transferase, family 2 {ECO:0000313|EMBL:ABQ92779.1}; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseifle
13_1_40cm_4_scaffold_1638_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15647..16717
DNA (1071bp) protein (357aa)
NAD-dependent epimerase/dehydratase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NAD-dependent epimerase/dehydratase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] id=14627557 bin=bin7_NC10_sister species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
NAD-dependent epimerase/dehydratase
13_1_40cm_4_scaffold_1638_20
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

16816..18216
DNA (1401bp) protein (467aa)
ABC transporter substrate binding protein Tax=GWA2_Elusimicrobia_69_24_curated
ABC-type dipeptide transport system, periplasmic component id=2250676 bin=GWA2_Elusimicrobia_69_24 species=unknown genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
ABC transporter substrate binding protein
13_1_40cm_4_scaffold_1638_21
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

18238..19164
DNA (927bp) protein (309aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component id=2250631 bin=GWA2_Elusimicrobia_69_24 species=Rhizobium sp. CF080 genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
peptide ABC transporter permease; K02033 peptide/nickel transport system permease protein Tax=GWA2_Elusimicrobia_69_24_curated
putative peptide ABC transporter permease
13_1_40cm_4_scaffold_1638_22
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

19224..20045
DNA (822bp) protein (274aa)
binding-protein-dependent transport systems inner membrane component; K02034 peptide/nickel transport system permease protein Tax=GWA2_Rokubacteria_70_23_curated
Binding-protein-dependent transport systems inner membrane component id=4262063 bin=GWF2_Methylomirabilis_70_14 species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport system inner membrane protein
13_1_40cm_4_scaffold_1638_23
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

20224..20652
DNA (429bp) protein (143aa)
Uncharacterized protein id=2250629 bin=GWA2_Elusimicrobia_69_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
hypothetical protein Tax=GWA2_Elusimicrobia_69_24_curated
hypothetical protein
13_1_40cm_4_scaffold_1638_24
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

21207..22184
DNA (978bp) protein (326aa)
NAD-dependent epimerase/dehydratase; K01711 GDPmannose 4,6-dehydratase [EC:4.2.1.47] Tax=GWC2_Rokubacteria_70_16_curated
NAD-dependent epimerase/dehydratase id=2250555 bin=GWA2_Elusimicrobia_69_24 species=Paenibacillus mucilaginosus genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
NAD-dependent epimerase/dehydratase
13_1_40cm_4_scaffold_1638_25
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

23033..23260
DNA (228bp) protein (76aa)
Glycosyltransferase id=2250554 bin=GWA2_Elusimicrobia_69_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
glycosyltransferase Tax=GWC2_Rokubacteria_70_16_curated
glycosyltransferase
13_1_40cm_4_scaffold_1638_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

23254..24639
DNA (1386bp) protein (462aa)
capsular polysaccharide synthesis protein (cpsA) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative capsular polysaccharide synthesis protein (CpsA) id=2250553 bin=GWA2_Elusimicrobia_69_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
capsular polysaccharide synthesis protein (cpsA)
13_1_40cm_4_scaffold_1638_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(24745..25101)
DNA (357bp) protein (119aa)
UPI0001586237 related cluster id=3431001 bin=GWA2_Methylomirabilis_73_35 species=Botryotinia fuckeliana genus=Botryotinia taxon_order=Helotiales taxon_class=Leotiomycetes phylum=Ascomycota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_1638_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(25330..25476)
DNA (147bp) protein (49aa)
amidohydrolase 2; K07046 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
amidohydrolase 2 id=2319316 bin=GWA2_Methylomirabilis_73_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1638_29
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

25606..27243
DNA (1638bp) protein (546aa)
Amidase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1CA50_SPHTD
Amidase
Amidase {ECO:0000313|EMBL:ACZ40693.1}; Flags: Precursor;; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" so
13_1_40cm_4_scaffold_1638_30
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27258..28244
DNA (987bp) protein (329aa)
Acryloyl-coenzyme A reductase n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MJE0_CORCM
qor4; acryloyl-coenzyme A reductase Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
qor4; acryloyl-coenzyme A reductase
Displaying items 1-30 of 34 in total

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