ggKbase home page

13_1_40cm_4_scaffold_1713

Search features with annotation key words

Displaying items 1-30 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1713_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3..1115)
DNA (1113bp) protein (371aa)
Extracellular ligand-binding receptor id=4973968 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein Tax=GWA2_Rokubacteria_73_35_curated
putative branched-chain amino acid ABC transporter substrate binding protein
13_1_40cm_4_scaffold_1713_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(1265..2602)
DNA (1338bp) protein (446aa)
acetyl-CoA carboxylase, biotin carboxylase; K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Acetyl-CoA carboxylase, biotin carboxylase id=4973966 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acetyl-CoA carboxylase, biotin carboxylase
13_1_40cm_4_scaffold_1713_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2854..4137)
DNA (1284bp) protein (428aa)
peptidase M, neutral zinc metallopeptidase, zinc-binding site Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Tetratricopeptide TPR_2 repeat protein id=4973965 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1713_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4146..4625)
DNA (480bp) protein (160aa)
acetyl-CoA carboxylase, biotin carboxyl carrier protein; K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein Tax=GWA2_Rokubacteria_73_35_curated
accB; acetyl Coa carboxylase, biotin carboxyl carrier protein; K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein id=14625690 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
accB; acetyl Coa carboxylase, biotin carboxyl carrier protein
13_1_40cm_4_scaffold_1713_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4625..5197)
DNA (573bp) protein (191aa)
elongation factor P; K02356 elongation factor P Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Elongation factor P id=4103371 bin=GWC2_Methylomirabilis_70_24 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
translation elongation factor P
13_1_40cm_4_scaffold_1713_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5203..5832)
DNA (630bp) protein (210aa)
TPR domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=14625688 bin=bin7_NC10_sister species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_1713_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5886..6968)
DNA (1083bp) protein (361aa)
3-dehydroquinate synthase (EC:4.2.3.4) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase id=4614256 bin=GWC2_Methylomirabilis_70_16 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_1713_8
unknown

Not on your lists

7218..8069
DNA (852bp) protein (284aa)

This feature has no annotations

13_1_40cm_4_scaffold_1713_9
unknown

Not on your lists

8628..9002
DNA (375bp) protein (125aa)

This feature has no annotations

13_1_40cm_4_scaffold_1713_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9356..9817)
DNA (462bp) protein (154aa)
Uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=14625684 bin=bin7_NC10_sister species=Mycobacterium xenopi genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_1713_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9829..10434)
DNA (606bp) protein (202aa)
pilus assembly protein PilO; K02664 type IV pilus assembly protein PilO Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=14625683 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pilO; protein PilO
13_1_40cm_4_scaffold_1713_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10436..10993)
DNA (558bp) protein (186aa)
fimbrial assembly family protein; K02663 type IV pilus assembly protein PilN Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Type IV pilus assembly protein PilN id=4614264 bin=GWC2_Methylomirabilis_70_16 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
fimbrial assembly family protein
13_1_40cm_4_scaffold_1713_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10990..12039)
DNA (1050bp) protein (350aa)
pilM; type IV pilus biogenesis protein PilM; K02662 type IV pilus assembly protein PilM Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Type IV pilus assembly protein PilM id=4953742 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pilM; type IV pilus biogenesis protein PilM
13_1_40cm_4_scaffold_1713_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12317..13699)
DNA (1383bp) protein (461aa)
Uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=4139422 bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1713_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13711..14088)
DNA (378bp) protein (126aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=4953737 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1713_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14142..14591)
DNA (450bp) protein (150aa)
Putative type 4 fimbrial pilin related transmembrane protein id=4953736 bin=GWA2_Methylomirabilis_73_35 species=Ralstonia sp. PBA genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Putative type 4 fimbrial pilin related transmembrane protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein; K08084 type IV fimbrial biogenesis protein FimT
13_1_40cm_4_scaffold_1713_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14588..15382)
DNA (795bp) protein (265aa)
prepilin peptidase; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] Tax=GWA2_Rokubacteria_73_35_curated
pilD; type IV pilus prepilin peptidase PilD (EC:2.1.1.- 3.4.23.43)
Type 4 prepilin-like proteins leader peptide-processing enzyme id=4383531 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1713_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15379..17316)
DNA (1938bp) protein (646aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Tetratricopeptide TPR_2 repeat protein id=4953734 bin=GWA2_Methylomirabilis_73_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1713_19
unknown

Not on your lists

comp(17420..17539)
DNA (120bp) protein (40aa)

This feature has no annotations

13_1_40cm_4_scaffold_1713_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18025..19410)
DNA (1386bp) protein (462aa)
pilR; transcriptional regulatory protein pilR; K02667 two-component system, NtrC family, response regulator PilR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pilR; regulator protein pilR; K02667 two-component system, NtrC family, response regulator PilR id=14625676 bin=bin7_NC10_sister species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
pilR; sigma-54-dependent transcriptional response regulator PilR
13_1_40cm_4_scaffold_1713_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19403..21019)
DNA (1617bp) protein (539aa)
multi-sensor signal transduction histidine kinase; K02668 two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Multi-sensor signal transduction histidine kinase id=3773059 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Multi-sensor signal transduction histidine kinase
13_1_40cm_4_scaffold_1713_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21019..22221)
DNA (1203bp) protein (401aa)
pilC; type 4 fimbrial assembly protein pilC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Type 4 fimbrial assembly protein pilC id=4686861 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
pilC; type 4 fimbrial assembly protein pilC
13_1_40cm_4_scaffold_1713_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22234..23352)
DNA (1119bp) protein (373aa)
twitching motility protein; K02669 twitching motility protein PilT Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Twitching motility pilus retraction ATPase id=4686860 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
twitching motility protein
13_1_40cm_4_scaffold_1713_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23381..25117)
DNA (1737bp) protein (579aa)
type II secretion system protein E; K02652 type IV pilus assembly protein PilB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Type IV-A pilus assembly ATPase PilB id=3773045 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
type II secretion system protein E
13_1_40cm_4_scaffold_1713_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(25127..25621)
DNA (495bp) protein (165aa)
phosphatase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Predicted phosphatase id=4311466 bin=GWA2_Methylomirabilis_73_35 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphatase
13_1_40cm_4_scaffold_1713_26
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(25618..26427)
DNA (810bp) protein (270aa)
protein mazG Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Protein mazG id=4311465 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
protein mazG
13_1_40cm_4_scaffold_1713_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

26489..26872
DNA (384bp) protein (128aa)
Putative uncharacterized protein id=4311464 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_4_scaffold_1713_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(26856..27488)
DNA (633bp) protein (211aa)
hypothetical protein id=4311463 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_1713_29
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

27670..28146
DNA (477bp) protein (159aa)
Heat shock protein Hsp20 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Heat shock protein Hsp20 id=4311462 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Heat shock protein Hsp20
13_1_40cm_4_scaffold_1713_30
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

28230..30143
DNA (1914bp) protein (638aa)
dnaK; chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
dnaK; chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70) id=14625666 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
dnaK; chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70)
Displaying items 1-30 of 69 in total

View Taxonomy