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13_1_40cm_4_scaffold_1824

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1824_1
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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2..991
DNA (990bp) protein (330aa)
Type IV pilus biogenesis ATPase PilB n=4 Tax=Geobacter RepID=Q39VU7_GEOMG id=5224980 bin=16ft_combo_ws3_JS1 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
pilB; type IV pilus biogenesis protein PilB; K02652 type IV pilus assembly protein PilB Tax=RBG_16_Gemmatimonadetes_66_8_curated
pilF; type IV pilus assembly protein
13_1_40cm_4_scaffold_1824_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

988..1962
DNA (975bp) protein (325aa)
Twitching mobility protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA13_GEMAT
pilT; twitching mobility protein; K02669 twitching motility protein PilT Tax=RBG_16_Gemmatimonadetes_66_8_curated
twitching motility protein
13_1_40cm_4_scaffold_1824_3
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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1916..2110
DNA (195bp) protein (65aa)
Twitching mobility protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA13_GEMAT
pilT; twitching mobility protein
Twitching mobility protein {ECO:0000313|EMBL:BAH39611.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain
13_1_40cm_4_scaffold_1824_4
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

2132..2581
DNA (450bp) protein (150aa)
Type IV pilus assembly protein PilC n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA12_GEMAT
pilC; type IV pilus assembly protein PilC; K02653 type IV pilus assembly protein PilC Tax=RBG_16_Gemmatimonadetes_66_8_curated
Type II secretion system F domain-containing protein
13_1_40cm_4_scaffold_1824_5
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

2536..3297
DNA (762bp) protein (254aa)
Type IV pilus assembly protein PilC n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA12_GEMAT
pilC; type IV pilus assembly protein PilC; K02653 type IV pilus assembly protein PilC Tax=RBG_16_Gemmatimonadetes_66_8_curated
Type II secretion system F domain-containing protein
13_1_40cm_4_scaffold_1824_6
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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3653..4468
DNA (816bp) protein (272aa)
Ribonucleotide reductase n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SGH3_THEM7
ribonucleotide reductase
Ribonucleotide reductase {ECO:0000313|EMBL:ADU51625.1}; TaxID=644966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="The
13_1_40cm_4_scaffold_1824_7
unknown

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comp(4480..5028)
DNA (549bp) protein (183aa)

This feature has no annotations

13_1_40cm_4_scaffold_1824_8
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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5287..6948
DNA (1662bp) protein (554aa)
two-component histidine kinase; K02668 two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Two-component histidine kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9X0_GEMAT
two-component histidine kinase
13_1_40cm_4_scaffold_1824_9
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

7057..8433
DNA (1377bp) protein (459aa)
NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9W9_GEMAT
NtrC family two-component response regulator Tax=GWC2_Gemmatimonadetes_71_10_curated
NtrC family two-component response regulator
13_1_40cm_4_scaffold_1824_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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8417..9133
DNA (717bp) protein (239aa)
glycosyl transferase family protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ribosomal RNA adenine methylase transferase id=12554429 bin=CNBR_ACIDO species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
putative pristinamycin I synthase 3
13_1_40cm_4_scaffold_1824_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

9133..9870
DNA (738bp) protein (246aa)
Glycosyl transferase family 2 n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7Q9Z3_9DELT
glycosyltransferase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
glycosyl transferase family protein
13_1_40cm_4_scaffold_1824_12
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

9870..11390
DNA (1521bp) protein (507aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Anaeromyxobacter sp. (strain K) RepID=B4UH26_ANASK
transmembrane and TPR repeat-containing protein CG4341-like Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_40cm_4_scaffold_1824_13
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

11374..12924
DNA (1551bp) protein (517aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8JE21_ANAD2
transmembrane and TPR repeat-containing protein CG4341-like Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_40cm_4_scaffold_1824_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

13162..13602
DNA (441bp) protein (147aa)
Putative pilin n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3H6_GEMAT
African swine fever virus j13L
African swine fever virus j13L {ECO:0000313|EMBL:AHG91523.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_1824_15
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

13821..14249
DNA (429bp) protein (143aa)
Putative pilin n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3H6_GEMAT
African swine fever virus j13L
African swine fever virus j13L {ECO:0000313|EMBL:AHG91523.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_1824_16
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

14264..15415
DNA (1152bp) protein (384aa)
Two-component histidine kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABF8_GEMAT
two-component histidine kinase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
two-component histidine kinase
13_1_40cm_4_scaffold_1824_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

15412..16767
DNA (1356bp) protein (452aa)
Sigma-54-dependent transcriptional response regulator n=2 Tax=Geobacter sulfurreducens RepID=D7AL21_GEOSK
two component, sigma54 specific, Fis family transcriptional regulator; K07714 two-component system, NtrC family, response regulator AtoC Tax=RBG_16_Gemmatimonadetes_66_8_curated
sigma-54-dependent transcriptional response regulator
13_1_40cm_4_scaffold_1824_18
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

16904..17365
DNA (462bp) protein (154aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_4_scaffold_1824_19
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

17365..17745
DNA (381bp) protein (127aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_4_scaffold_1824_20
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

17733..18608
DNA (876bp) protein (292aa)
Type II secretory pathway component PulJ-like n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LLC9_SYNFM
hypothetical protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_4_scaffold_1824_21
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

18640..19284
DNA (645bp) protein (215aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_4_scaffold_1824_22
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

19310..19777
DNA (468bp) protein (156aa)
Hypothetical membrane protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_4_scaffold_1824_23
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

20070..21122
DNA (1053bp) protein (351aa)
Putative type IV pilus assembly protein PilM n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABF4_GEMAT
pilM; putative type IV pilus assembly protein PilM; K02662 type IV pilus assembly protein PilM Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
pilM; putative type IV pilus assembly protein PilM
13_1_40cm_4_scaffold_1824_24
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

21119..21838
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABF3_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_40cm_4_scaffold_1824_25
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

21843..22472
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABF2_GEMAT
hypothetical protein; K02664 type IV pilus assembly protein PilO Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_40cm_4_scaffold_1824_26
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

22469..22942
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABF1_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_4_scaffold_1824_27
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

22939..24615
DNA (1677bp) protein (559aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABF0_GEMAT
type II and III secretion system protein
Type II and III secretion system protein {ECO:0000313|EMBL:AHG91513.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Displaying 27 items

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