ggKbase home page

13_1_40cm_4_scaffold_185

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_185_1
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..453
DNA (453bp) protein (151aa)
Tautomerase enzyme n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RV46_LEIAQ
Uncharacterized protein {ECO:0000313|EMBL:KFE63175.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyal
4-oxalocrotonate tautomerase family protein
13_1_40cm_4_scaffold_185_2
unknown

Not on your lists

563..820
DNA (258bp) protein (86aa)

This feature has no annotations

13_1_40cm_4_scaffold_185_3
Aciduliprofundum boonei, Aciduliprofundum, Euryarchaeota, Archaea

Not on your lists

comp(1231..2781)
DNA (1551bp) protein (517aa)
hypothetical protein n=2 Tax=unclassified Crenarchaeota (miscellaneous) RepID=UPI00035EDE82
Radical SAM domain protein
Radical SAM domain protein {ECO:0000313|EMBL:EDY35014.1}; TaxID=439481 species="Archaea; Euryarchaeota; Aciduliprofundum.;" source="Aciduliprofundum boonei (strain DSM 19572 / T469).;"
13_1_40cm_4_scaffold_185_4
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

3278..3775
DNA (498bp) protein (166aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CCR7_THET1
alkyl hydroperoxide reductase
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:ACZ42582.1}; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-
13_1_40cm_4_scaffold_185_5
unknown

Not on your lists

3857..4135
DNA (279bp) protein (93aa)

This feature has no annotations

13_1_40cm_4_scaffold_185_6

Not on your lists

4375..5073
DNA (699bp) protein (233aa)
Probable endonuclease 4 {ECO:0000256|HAMAP-Rule:MF_00152}; EC=3.1.21.2 {ECO:0000256|HAMAP-Rule:MF_00152};; Endodeoxyribonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; Endonuclease IV {ECO:0000256|HAMA
Probable endonuclease 4 n=1 Tax=uncultured archaeon RepID=D1JEL2_9ARCH
apurinic endonuclease APN1
13_1_40cm_4_scaffold_185_7
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

Not on your lists

5074..5769
DNA (696bp) protein (232aa)
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18)
Endonuclease III n=1 Tax=Methanobacterium sp. (strain AL-21) RepID=F0TC36_METSL
endonuclease III Tax=RBG_16_Thaumarchaeota_49_8_curated
13_1_40cm_4_scaffold_185_8
unknown

Not on your lists

5897..6283
DNA (387bp) protein (129aa)

This feature has no annotations

13_1_40cm_4_scaffold_185_9

Not on your lists

comp(6337..6771)
DNA (435bp) protein (145aa)
Putative histidine triad protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IN38_NITGG
Histidine triad (HIT) protein (Hit) {ECO:0000313|EMBL:AIE92020.1}; TaxID=1455897 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote AD1000_19_G07.;"
histidine triad protein
13_1_40cm_4_scaffold_185_10
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

Not on your lists

comp(6777..7346)
DNA (570bp) protein (190aa)
methyltransferase (EC:2.1.1.-) id=1242342 bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
methyltransferase (EC:2.1.1.-) Tax=RBG_13_Chloroflexi_51_36_curated
methyltransferase (EC:2.1.1.-)
13_1_40cm_4_scaffold_185_11

Not on your lists

comp(7312..7539)
DNA (228bp) protein (76aa)
Methyltransferase n=1 Tax=Desulfococcus multivorans DSM 2059 RepID=S7TKB1_DESML
Marine sediment metagenome DNA, contig: S06H3_S14845 {ECO:0000313|EMBL:GAI44107.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
type 12 methyltransferase
13_1_40cm_4_scaffold_185_12
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(7543..8085)
DNA (543bp) protein (181aa)
ATP:cob(I)alamin adenosyltransferase n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UUR4_ROSS1
ATP--cobalamin adenosyltransferase
ATP:cob(I)alamin adenosyltransferase {ECO:0000313|EMBL:ABQ90367.1}; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Ro
13_1_40cm_4_scaffold_185_13

Not on your lists

8842..9903
DNA (1062bp) protein (354aa)
Radical SAM domain-containing protein (PflA, pflC, pflE) {ECO:0000313|EMBL:AIF04611.1}; EC=1.97.1.4 {ECO:0000313|EMBL:AIF04611.1};; TaxID=1456054 species="Archaea; Thaumarchaeota; environmental sample
hypothetical protein n=2 Tax=unclassified Crenarchaeota RepID=UPI00037F89B9
radical SAM domain-containing protein
13_1_40cm_4_scaffold_185_14
unknown

Not on your lists

comp(10444..10695)
DNA (252bp) protein (84aa)

This feature has no annotations

13_1_40cm_4_scaffold_185_15
unknown

Not on your lists

comp(10996..11337)
DNA (342bp) protein (114aa)

This feature has no annotations

13_1_40cm_4_scaffold_185_16
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(11464..11847)
DNA (384bp) protein (128aa)
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein n=1 Tax=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) RepID=D2PQH5_KRIFD
PPOX class probable F420-dependent enzyme, MSMEG_5819 family
PPOX class probable F420-dependent enzyme, MSMEG_5819 family {ECO:0000313|EMBL:AIF84335.1}; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitr
13_1_40cm_4_scaffold_185_17
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11984..12796)
DNA (813bp) protein (271aa)
putative 3-demethylubiquinol 3-O-methyltransferase (EC:2.1.1.64)
Methyltransferase type 11 id=2115474 bin=GWB2_Geobacter-like_52_12 species=Anoxybacillus sp. DT3-1 genus=Anoxybacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
type 11 methyltransferase Tax=GWB2_Geobacteraceae_52_12_curated
13_1_40cm_4_scaffold_185_18
unknown

Not on your lists

comp(12929..14440)
DNA (1512bp) protein (504aa)

This feature has no annotations

13_1_40cm_4_scaffold_185_19
Paenibacillus lactis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14582..15337)
DNA (756bp) protein (252aa)
KNTase domain protein n=1 Tax=Paenibacillus lactis 154 RepID=G4HP66_9BACL
KNTase domain protein {ECO:0000313|EMBL:EHB48903.1}; TaxID=743719 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus lactis 154.;"
aminoglycoside nucleotidyltransferase
13_1_40cm_4_scaffold_185_20
RBG_16_Ignavibacteria_35_7_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

15373..16326
DNA (954bp) protein (318aa)
Putative DNA methylase id=3924656 bin=GWF2_Ignavibacteria_35_20 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
putative DNA methylase Tax=RBG_16_Ignavibacteria_35_7_curated
hypothetical protein
13_1_40cm_4_scaffold_185_21
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

16399..16662
DNA (264bp) protein (88aa)
Phosphoribosylformylglycinamidine synthase subunit PurS {ECO:0000256|HAMAP-Rule:MF_01926}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_01926};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_01926};; Formyl
Putative phosphoribosylformylglycinamidine synthase PurS n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFC8_NITGG
purS; putative phosphoribosylformylglycinamidine synthase PurS
13_1_40cm_4_scaffold_185_22
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

16670..17383
DNA (714bp) protein (238aa)
phosphoribosylformylglycinamidine synthase subunit I (EC:6.3.5.3); K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] Tax=RBG_16_Bathyarchaeota_48_13_curated
phosphoribosylformylglycinamidine synthase subunit I (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase 1 n=1 Tax=uncultured archaeon W5-61a RepID=H9BX94_9ARCH
13_1_40cm_4_scaffold_185_23
unknown

Not on your lists

17385..17639
DNA (255bp) protein (85aa)

This feature has no annotations

13_1_40cm_4_scaffold_185_24
unknown

Not on your lists

17636..18034
DNA (399bp) protein (133aa)

This feature has no annotations

13_1_40cm_4_scaffold_185_25
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

18031..20247
DNA (2217bp) protein (739aa)
phosphoribosylformylglycinamidine synthase 2 (EC:6.3.5.3); K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] Tax=RBG_16_Bathyarchaeota_48_13_curated
purL; phosphoribosylformylglycinamidine synthase II (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase 2 n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJS1_NITGG
13_1_40cm_4_scaffold_185_26
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

Not on your lists

20412..21953
DNA (1542bp) protein (514aa)
purF; amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHU9_NITGG
class II glutamine amidotransferase Tax=RBG_16_Thaumarchaeota_49_8_curated
13_1_40cm_4_scaffold_185_27
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21977..23266
DNA (1290bp) protein (430aa)
phosphoribosylamine/glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {EC
Phosphoribosylamine--glycine ligase n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WVG6_KYRT2
13_1_40cm_4_scaffold_185_28
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

Not on your lists

23273..23689
DNA (417bp) protein (139aa)
histidine triad (HIT) protein; K02503 Hit-like protein involved in cell-cycle regulation Tax=RBG_16_Micrarchaeota_36_9_curated
hypothetical protein; K02503 Hit-like protein involved in cell-cycle regulation id=5102008 bin=GWF1_WS6_37_7 species=WS6_GWF1_36_7 genus=WS6_GWF1_36_7 taxon_order=WS6_GWF1_36_7 taxon_class=WS6_GWF1_36_7 phylum=WS6 tax=GWF1_WS6_37_7 organism_group=WS6 (Doikabacteria)
histidine triad (HIT) protein
13_1_40cm_4_scaffold_185_29
RBG_16_Chloroflexi_48_8_curated, Chloroflexi, Bacteria

Not on your lists

23780..24541
DNA (762bp) protein (254aa)
hypothetical protein Tax=RBG_16_Chloroflexi_48_8_curated
13_1_40cm_4_scaffold_185_30
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

24544..25146
DNA (603bp) protein (201aa)
purN; phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
Phosphoribosylglycinamide formyltransferase {ECO:0000313|EMBL:AFU57385.1}; EC=2.1.2.2 {ECO:0000313|EMBL:AFU57385.1};; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales
Phosphoribosylglycinamide formyltransferase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ICM7_NITGG
Displaying 30 items

View Taxonomy