ggKbase home page

13_1_40cm_4_scaffold_1947

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1947_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(45..845)
DNA (801bp) protein (267aa)
binding-protein-dependent transport system inner membrane protein; K02034 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Binding-protein-dependent transport systems inner membrane component id=1924018 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport system inner membrane protein
13_1_40cm_4_scaffold_1947_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(985..1902)
DNA (918bp) protein (306aa)
Binding-protein-dependent transport systems inner membrane component id=1924020 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport system inner membrane protein; K02033 peptide/nickel transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
binding-protein-dependent transport system inner membrane protein
13_1_40cm_4_scaffold_1947_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1972..2379)
DNA (408bp) protein (136aa)
hypothetical protein id=1924156 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_1947_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2427..3101)
DNA (675bp) protein (225aa)
lipolytic protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Lipolytic enzyme, G-D-S-L id=1924158 bin=GWA2_Methylomirabilis_73_35 species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
adventurous gliding motility protein C
13_1_40cm_4_scaffold_1947_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3122..4081)
DNA (960bp) protein (320aa)
luciferase family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Luciferase family protein id=1924160 bin=GWA2_Methylomirabilis_73_35 species=Nocardioides sp. genus=Nocardioides taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
luciferase family protein
13_1_40cm_4_scaffold_1947_6
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(4083..4355)
DNA (273bp) protein (91aa)
Regulatory protein MerR n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TP33_9CHLR
Regulatory protein MerR {ECO:0000313|EMBL:EFH87389.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racem
excisionase family DNA binding protein
13_1_40cm_4_scaffold_1947_7
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

4475..5671
DNA (1197bp) protein (399aa)
citrate synthase (EC:2.3.3.1); K01647 citrate synthase [EC:2.3.3.1] id=14632303 bin=bin9_gal15 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
citrate synthase (EC:2.3.3.1); K01647 citrate synthase [EC:2.3.3.1] Tax=CSP1_3_Armatimonadetes
citrate synthase (EC:2.3.3.1)
13_1_40cm_4_scaffold_1947_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5623..6159)
DNA (537bp) protein (179aa)
Putative O-methyltransferase id=1924162 bin=GWA2_Methylomirabilis_73_35 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
O-methyltransferase family protein Tax=GWA2_Rokubacteria_73_35_curated
putative O-methyltransferase
13_1_40cm_4_scaffold_1947_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6177..7130)
DNA (954bp) protein (318aa)
mvaB; hydroxymethylglutaryl-CoA lyase (EC:4.1.3.4); K01640 hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] Tax=GWA2_Rokubacteria_73_35_curated
hydroxymethylglutaryl-CoA lyase id=14627904 bin=bin7_NC10_sister species=Pseudomonas stutzeri genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
HMGL-like family protein
13_1_40cm_4_scaffold_1947_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7228..7725
DNA (498bp) protein (166aa)
ferritin Dps family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ferritin Dps family protein id=1924166 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrosoarchaeum koreensis genus=Candidatus Nitrosoarchaeum taxon_order=Nitrosopumilales taxon_class=unknown phylum=Thaumarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dps4; ferritin, Dps family protein
13_1_40cm_4_scaffold_1947_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7940..9106)
DNA (1167bp) protein (389aa)
Acyl-CoA dehydrogenase id=1924172 bin=GWA2_Methylomirabilis_73_35 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mmgC1; acyl-CoA dehydrogenase Tax=GWA2_Rokubacteria_73_35_curated
mmgC1; acyl-CoA dehydrogenase
13_1_40cm_4_scaffold_1947_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9109..9216)
DNA (108bp) protein (36aa)
fadB; enoyl CoA hydratase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Enoyl CoA hydratase id=1924174 bin=GWA2_Methylomirabilis_73_35 species=Citreicella sp. 357 genus=Citreicella taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1947_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9191..9859)
DNA (669bp) protein (223aa)
Enoyl CoA hydratase id=1924174 bin=GWA2_Methylomirabilis_73_35 species=Citreicella sp. 357 genus=Citreicella taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
fadB; enoyl CoA hydratase Tax=GWA2_Rokubacteria_73_35_curated
fadB; enoyl CoA hydratase
13_1_40cm_4_scaffold_1947_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9856..11046)
DNA (1191bp) protein (397aa)
Formyl-CoA transferase (EC:2.8.3.16) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Formyl-CoA transferase (EC:2.8.3.16)
Formyl-CoA transferase id=1924176 bin=GWA2_Methylomirabilis_73_35 species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1947_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11164..12852
DNA (1689bp) protein (563aa)
Ig-like domain-containing surface protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Guanylate cyclase (Fragment) id=4492891 bin=GWA2_Methylomirabilis_73_35 species=uncultured bacterium W5-15b genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1947_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12860..13213)
DNA (354bp) protein (118aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_4_scaffold_1947_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13356..13664)
DNA (309bp) protein (103aa)
Redoxin domain protein id=4646441 bin=GWA2_Methylomirabilis_73_35 species=Oceaniovalibus guishaninsula genus=Oceaniovalibus taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Redoxin domain protein Tax=GWA2_Rokubacteria_73_35_curated
Redoxin domain-containing protein
13_1_40cm_4_scaffold_1947_18
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(13683..13910)
DNA (228bp) protein (76aa)
putative thiol-disulfide oxidoreductase Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Thioredoxin family protein id=4646438 bin=GWA2_Methylomirabilis_73_35 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative thiol-disulfide oxidoreductase
13_1_40cm_4_scaffold_1947_19
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(14000..14191)
DNA (192bp) protein (64aa)
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4)
molybdopterin binding aldehyde oxidase and xanthine dehydrogenase Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_4_scaffold_1947_20
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14956..16173
DNA (1218bp) protein (406aa)
putative branched-chain amino acid ABC transporter periplasmic-binding protein Tax=RBG_16_Deltaproteobacteria_49_23_curated
Extracellular ligand-binding receptor id=3109556 bin=GWC2_Syntrophus__56_31 species=Afipia broomeae genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
Extracellular ligand-binding receptor
13_1_40cm_4_scaffold_1947_21
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16178..17062
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002EAC3FF
Uncharacterized protein {ECO:0000313|EMBL:EKS36712.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
permease of ABC transporter protein
13_1_40cm_4_scaffold_1947_22
GWC2_Syntrophus_56_31_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17059..18024
DNA (966bp) protein (322aa)
Permease component of ABC transporter protein id=3109427 bin=GWC2_Syntrophus__56_31 species=unknown genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
branched-chain amino acid transport permease; K01998 branched-chain amino acid transport system permease protein Tax=GWC2_Syntrophus_56_31_curated
inner-membrane translocator
13_1_40cm_4_scaffold_1947_23
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

18021..19202
DNA (1182bp) protein (394aa)
acyl-CoA dehydrogenase (EC:1.3.99.-) Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI0003656D0F
acyl-CoA dehydrogenase type 2 domain-containing protein
13_1_40cm_4_scaffold_1947_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

19323..19688
DNA (366bp) protein (122aa)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_4_scaffold_1947_25
RBG_13_Deltaproteobacteria_51_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19738..20445)
DNA (708bp) protein (236aa)
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RBG_13_Deltaproteobacteria_51_10_curated
Putative branched-chain amino acid ABC transporter, ATP-binding protein id=3109422 bin=GWC2_Syntrophus__56_31 species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
ABC transporter-like protein
13_1_40cm_4_scaffold_1947_26
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20442..21206)
DNA (765bp) protein (255aa)
Putative branched-chain amino acid ABC transporter, ATP-binding protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IC44_BORPD
branched-chain amino acid ABC transporter ATP-binding protein
Putative branched-chain amino acid ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CAP41521.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenace
13_1_40cm_4_scaffold_1947_27

Not on your lists

21299..22255
DNA (957bp) protein (319aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI000374B8AB
Uncharacterized protein {ECO:0000313|EMBL:KKL99026.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
beta-lactamase
13_1_40cm_4_scaffold_1947_28
unknown

Not on your lists

comp(22293..22766)
DNA (474bp) protein (158aa)

This feature has no annotations

13_1_40cm_4_scaffold_1947_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22796..23821)
DNA (1026bp) protein (342aa)
methionine synthase, vitamin-B12 independent; K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
vitamin-B12 independent methionine synthase; K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] id=14626695 bin=bin7_NC10_sister species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
methionine synthase, vitamin-B12 independent
Displaying 29 items

View Taxonomy