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13_1_40cm_4_scaffold_195

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_195_1
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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1..480
DNA (480bp) protein (160aa)
Tax=RBG_16_Thaumarchaeota_49_8_curated
13_1_40cm_4_scaffold_195_2
unknown

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comp(641..1204)
DNA (564bp) protein (188aa)

This feature has no annotations

13_1_40cm_4_scaffold_195_3
R_RIF_OD1_09_54_12, RIF-OD1-9, Parcubacteria, Bacteria

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comp(1224..2399)
DNA (1176bp) protein (392aa)
choline monooxygenase n=1 Tax=Legionella shakespearei RepID=UPI0003700CA9
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_RIF_OD1_09_54_12_curated
ring-hydroxylating dioxygenase, large terminal subunit
13_1_40cm_4_scaffold_195_4
unknown

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comp(2404..2592)
DNA (189bp) protein (63aa)

This feature has no annotations

13_1_40cm_4_scaffold_195_5

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2901..3611
DNA (711bp) protein (237aa)
Phosphoribosylformylglycinamidine synthase subunit PurQ {ECO:0000256|HAMAP-Rule:MF_00421}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00421};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00421};; Formyl
phosphoribosylformylglycinamidine synthase subunit I (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase 1 n=1 Tax=uncultured archaeon W5-61a RepID=H9BX94_9ARCH
13_1_40cm_4_scaffold_195_6
unknown

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3646..3852
DNA (207bp) protein (69aa)

This feature has no annotations

13_1_40cm_4_scaffold_195_7
unknown

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3856..4059
DNA (204bp) protein (68aa)

This feature has no annotations

13_1_40cm_4_scaffold_195_8
Calothrix sp. PCC 7507, Calothrix, Nostocales, Cyanobacteria, Bacteria

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4088..7774
DNA (3687bp) protein (1229aa)
phosphoribosylformylglycinamidine synthase 2 (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase 2 {ECO:0000313|EMBL:AFY35167.1}; EC=6.3.5.3 {ECO:0000313|EMBL:AFY35167.1};; TaxID=99598 species="Bacteria; Cyanobacteria; Nostocales; Rivulariaceae; Calothri
phosphoribosylglycinamide synthetase n=1 Tax=Fervidibacteria bacterium SCGC AAA471-D06 RepID=UPI0003717E93
13_1_40cm_4_scaffold_195_9
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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7771..9201
DNA (1431bp) protein (477aa)
purF; amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHU9_NITGG
class II glutamine amidotransferase Tax=RBG_16_Thaumarchaeota_49_8_curated
13_1_40cm_4_scaffold_195_10

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9209..10510
DNA (1302bp) protein (434aa)
purF-2; glutamine phosphoribosylpyrophosphate amidotransferase (EC:2.4.2.14)
Glutamine phosphoribosylpyrophosphate amidotransferase n=1 Tax=uncultured archaeon W5-61a RepID=H9BX97_9ARCH
Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000313|EMBL:AFD03419.1}; TaxID=1131008 species="Archaea; environmental samples.;" source="uncultured archaeon W5-61a.;"
13_1_40cm_4_scaffold_195_11

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10507..12042
DNA (1536bp) protein (512aa)
phosphoribosylamine/glycine ligase (EC:6.3.4.13)
Phosphoribosylamine/glycine ligase n=1 Tax=uncultured archaeon W5-61a RepID=H9BX98_9ARCH
Phosphoribosylamine/glycine ligase {ECO:0000313|EMBL:AFD03420.1}; TaxID=1131008 species="Archaea; environmental samples.;" source="uncultured archaeon W5-61a.;"
13_1_40cm_4_scaffold_195_12
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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12043..12666
DNA (624bp) protein (208aa)
purN; phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
Phosphoribosylglycinamide formyltransferase {ECO:0000313|EMBL:AFU57385.1}; EC=2.1.2.2 {ECO:0000313|EMBL:AFU57385.1};; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales
Phosphoribosylglycinamide formyltransferase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ICM7_NITGG
13_1_40cm_4_scaffold_195_13
Acetonema longum, Acetonema, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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12663..13523
DNA (861bp) protein (287aa)
Bifunctional protein FolD n=1 Tax=Acetonema longum DSM 6540 RepID=F7NGT8_9FIRM
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1009370 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Acetonema.;" source="Acetonema longum DSM 654
bifunctional protein folD
13_1_40cm_4_scaffold_195_14
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13520..14116
DNA (597bp) protein (199aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiacea
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TVJ5_ALKMQ
5-formyltetrahydrofolate cyclo-ligase
13_1_40cm_4_scaffold_195_15

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14113..14547
DNA (435bp) protein (145aa)
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7TBP4_9EURY
Marine sediment metagenome DNA, contig: S01H1_S23054 {ECO:0000313|EMBL:GAG15895.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
phosphoribosylaminoimidazole carboxylase catalytic subunit
13_1_40cm_4_scaffold_195_16
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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14548..15414
DNA (867bp) protein (289aa)
purC; phosphoribosylaminoimidazolesuccinocarboxamide synthase (EC:6.3.2.6) Tax=RBG_16_Thaumarchaeota_49_8_curated
purC; phosphoribosylaminoimidazolesuccinocarboxamide synthase (EC:6.3.2.6)
hypothetical protein n=1 Tax=candidate division YNPFFA RepID=UPI0003826EBE
13_1_40cm_4_scaffold_195_17
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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15417..16466
DNA (1050bp) protein (350aa)
purM; phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1) Tax=RBG_16_Thaumarchaeota_49_8_curated
purM; Phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Candidatus Nitrosoarchaeum limnia BG20 RepID=S2EJ09_9ARCH
13_1_40cm_4_scaffold_195_18
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(16505..16702)
DNA (198bp) protein (66aa)
hypothetical protein n=1 Tax=unclassified Crenarchaeota (miscellaneous) RepID=UPI00036BC640
Zinc finger, CDGSH-type domain protein {ECO:0000313|EMBL:EGP94232.1}; TaxID=1001994 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candida
hypothetical protein
13_1_40cm_4_scaffold_195_19
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(16802..17182)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJM8_NITGG
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:AIF84202.1}; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Ni
13_1_40cm_4_scaffold_195_20
unknown

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comp(17615..17737)
DNA (123bp) protein (41aa)

This feature has no annotations

13_1_40cm_4_scaffold_195_21
RLO_RIF05_58_11, RIF5, Bacteria

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comp(17890..18975)
DNA (1086bp) protein (362aa)
phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3); K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] T
purH; bifunctional purine biosynthesis protein PurH (EC:2.1.2.3 3.5.4.10)
hypothetical protein n=1 Tax=Hydrogenedentes bacterium JGI 0000039-J10 RepID=UPI000366C3E3
13_1_40cm_4_scaffold_195_22
Nitrospina gracilis, Nitrospina, Nitrospinales, Nitrospinia, Nitrospinae, Bacteria

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comp(18972..19568)
DNA (597bp) protein (199aa)
purH; bifunctional purine biosynthesis protein (EC:2.1.2.3 3.5.4.10)
Bifunctional purine biosynthesis protein PurH n=1 Tax=Nitrospina gracilis 3/211 RepID=M1ZEC0_9BACT
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=1266370 species="Bacteria; Nitrospinae; Nitrospinia; Nitrospinales; Nitrospinaceae
13_1_40cm_4_scaffold_195_23
unknown

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comp(19640..19855)
DNA (216bp) protein (72aa)

This feature has no annotations

13_1_40cm_4_scaffold_195_24
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

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comp(20225..22780)
DNA (2556bp) protein (852aa)
ABC transporter permease; K02004 putative ABC transport system permease protein Tax=RBG_16_Chloroflexi_56_8_curated
Hypothetical membrane protein id=4051727 bin=GWF2_Firmicute_51_9 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWF2_Firmicute_51_9 organism_group=Firmicute
MacB-like periplasmic core domain
13_1_40cm_4_scaffold_195_25
Palaeococcus pacificus, Palaeococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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comp(22803..23573)
DNA (771bp) protein (257aa)
ABC transporter related n=1 Tax=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) RepID=B9MLR1_CALBD
ABC transporter
ABC transporter {ECO:0000313|EMBL:AIF68441.1}; TaxID=1343739 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Palaeococcus.;" source="Palaeococcus pacificus DY20341.;"
13_1_40cm_4_scaffold_195_26

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23675..24208
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Aigarchaeota archaeon SCGC AAA471-A16 RepID=UPI0003655A1B
Marine sediment metagenome DNA, contig: S06H3_L07525 {ECO:0000313|EMBL:GAI13412.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
exonuclease-like protein
13_1_40cm_4_scaffold_195_27
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(24200..24877)
DNA (678bp) protein (226aa)
Rhomboid family protein n=1 Tax=Methanosaeta harundinacea (strain 6Ac) PF8_METH6">RepID=G7WPF8_METH6
rhomboid family protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
13_1_40cm_4_scaffold_195_28
unknown

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25091..25441
DNA (351bp) protein (117aa)

This feature has no annotations

13_1_40cm_4_scaffold_195_29

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25431..26300
DNA (870bp) protein (290aa)
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:00
cyoE; protoheme IX farnesyltransferase (EC:2.5.1.-)
Protoheme IX farnesyltransferase (Heme O synthase) (HemeB farnesyltransferase) id=4623269 bin=GWC2_Chloroflexi_73_18 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Displaying 29 items

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