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13_1_40cm_4_scaffold_197

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_197_1

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comp(1..603)
-----------------
DNA (603bp)
protein (201aa)
ATP-binding protein n=1 Tax=Salinispora pacifica RepID=UPI000380E53A
GTP-binding protein HflX {ECO:0000313|EMBL:AIA10758.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
small GTP-binding protein
13_1_40cm_4_scaffold_197_2
unknown

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comp(835..1029)
-----------------
DNA (195bp)
protein (65aa)

This feature has no annotations

13_1_40cm_4_scaffold_197_3
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1135..2484
-----------------
DNA (1350bp)
protein (450aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47C60_DECAR
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
13_1_40cm_4_scaffold_197_4
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

comp(2524..3396)
-----------------
DNA (873bp)
protein (291aa)
MiaA; tRNA delta(2)-isopentenylpyrophosphate transferase; K00791 tRNA dimethylallyltransferase [EC:2.5.1.75] Tax=CG_Arma_01
tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75); K00791 tRNA dimethylallyltransferase [EC:2.5.1.75] id=24421949 bin=RBG_19FT_COMBO_GAL15_69_19 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75)
13_1_40cm_4_scaffold_197_5
unknown

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comp(3393..4721)
-----------------
DNA (1329bp)
protein (443aa)

This feature has no annotations

13_1_40cm_4_scaffold_197_6
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(4708..5940)
-----------------
DNA (1233bp)
protein (411aa)
Uncharacterized protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C9P2_SPHTD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ40535.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" sourc
13_1_40cm_4_scaffold_197_7
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(5945..6910)
-----------------
DNA (966bp)
protein (322aa)
ATPase; K03924 MoxR-like ATPase [EC:3.6.3.-] Tax=RBG_16_Chloroflexi_68_14_curated
ATPase associated with various cellular activities AAA_3 n=2 Tax=Chloroflexus RepID=B9LB26_CHLSY
ATPase
13_1_40cm_4_scaffold_197_8
unknown

Not on your lists

comp(6918..7793)
-----------------
DNA (876bp)
protein (292aa)

This feature has no annotations

13_1_40cm_4_scaffold_197_9
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(7833..8672)
-----------------
DNA (840bp)
protein (280aa)
PHP domain protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C1M5_SPHTD
PHP domain-containing protein; K07053 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
PHP domain-containing protein
13_1_40cm_4_scaffold_197_10
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(8660..9433)
-----------------
DNA (774bp)
protein (258aa)
Putative uncharacterized protein n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CHC9_DESK7
hypothetical protein; K09769 hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
hypothetical protein
13_1_40cm_4_scaffold_197_11
unknown

Not on your lists

comp(9441..10676)
-----------------
DNA (1236bp)
protein (412aa)

This feature has no annotations

13_1_40cm_4_scaffold_197_12
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(10772..12304)
-----------------
DNA (1533bp)
protein (511aa)
metal dependent phosphohydrolase (EC:3.1.4.16); K06950 uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
metal dependent phosphohydrolase (EC:3.1.4.16)
ribonuclease n=1 Tax=Desulfurispora thermophila RepID=UPI00036883F6
13_1_40cm_4_scaffold_197_13
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

12497..12811
-----------------
DNA (315bp)
protein (105aa)
Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=PHS_THERP
pterin-4a-carbinolamine dehydratase Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
putative pterin-4-alpha-carbinolamine dehydratase
13_1_40cm_4_scaffold_197_14
unknown

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12876..13379
-----------------
DNA (504bp)
protein (168aa)

This feature has no annotations

13_1_40cm_4_scaffold_197_15
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(13393..13875)
-----------------
DNA (483bp)
protein (161aa)
Regulatory protein RecX n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I328_CALAS
recX; regulatory protein RecX; K03565 regulatory protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
recX; regulatory protein RecX
13_1_40cm_4_scaffold_197_16
Tepidanaerobacter acetatoxydans, Tepidanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13862..14980)
-----------------
DNA (1119bp)
protein (373aa)
Protein RecA n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LUA7_TEPAE
recombinase A
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1209989 species="Bacteria; Firmicut
13_1_40cm_4_scaffold_197_17
unknown

Not on your lists

comp(14977..15135)
-----------------
DNA (159bp)
protein (53aa)

This feature has no annotations

13_1_40cm_4_scaffold_197_18
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

15187..15771
-----------------
DNA (585bp)
protein (195aa)
ATP/cobalamin adenosyltransferase (EC:2.5.1.17) Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Putative cobalamin adenosyltransferase id=4887564 bin=GWC2_Chloroflexi_73_18 species=uncultured marine microorganism HF4000_008B14 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
ATP/cobalamin adenosyltransferase
13_1_40cm_4_scaffold_197_19
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15768..16598
-----------------
DNA (831bp)
protein (277aa)
aminoglycoside/hydroxyurea antibiotic resistance kinase (EC:2.7.1.72)
Aminoglycoside/hydroxyurea antibiotic resistance kinase n=1 Tax=Micromonospora lupini str. Lupac 08 RepID=I0LB82_9ACTO
Streptomycin 6-kinase {ECO:0000313|EMBL:EWM67768.1}; TaxID=457406 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
13_1_40cm_4_scaffold_197_20
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(16603..16923)
-----------------
DNA (321bp)
protein (107aa)
Serine O-acetyltransferase n=1 Tax=uncultured Chloroflexi bacterium RepID=H5SPH3_9CHLR id=5223952 bin=16ft_combo_ws3_JS1 species=uncultured Chloroflexi bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
hypothetical protein
13_1_40cm_4_scaffold_197_21
RBG_16_Chloroflexi_48_7_curated, Chloroflexi, Bacteria

Not on your lists

comp(16935..17162)
-----------------
DNA (228bp)
protein (76aa)
Uncharacterized protein n=1 Tax=Melioribacter roseus (strain P3M) RepID=I6ZY77_MELRP
hypothetical protein Tax=RBG_16_Chloroflexi_48_7_curated
hypothetical protein
13_1_40cm_4_scaffold_197_22
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

comp(17177..18205)
-----------------
DNA (1029bp)
protein (343aa)
Glucose sorbosone dehydrogenase n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SPQ4_9BACT
Glucose sorbosone dehydrogenase {ECO:0000313|EMBL:BAL58140.1}; TaxID=171953 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
glucose/sorbosone dehydrogenase
13_1_40cm_4_scaffold_197_23
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18528..19277)
-----------------
DNA (750bp)
protein (250aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI0003827715
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase Tax=RBG_16_Gamma2_60_9_curated
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
13_1_40cm_4_scaffold_197_24
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(19274..19828)
-----------------
DNA (555bp)
protein (185aa)
ruvB; Holliday junction DNA helicase RuvB (EC:3.1.22.4); K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C3D9_SPHTD
Holliday junction DNA helicase RuvB
Displaying 24 items

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