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13_1_40cm_4_scaffold_2012

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2012_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(3..269)
DNA (267bp) protein (89aa)
ABC transporter related id=4424352 bin=GWF2_Methylomirabilis_70_14 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter-like protein; K02049 NitT/TauT family transport system ATP-binding protein Tax=GWA2_Rokubacteria_70_23_curated
ABC transporter family protein
13_1_40cm_4_scaffold_2012_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(262..1053)
DNA (792bp) protein (264aa)
putative inner membrane component of binding-protein-dependent transport system; K02050 NitT/TauT family transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Putative inner membrane component of binding-protein-dependent transport system id=4424354 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative ABC transporter (permease protein)
13_1_40cm_4_scaffold_2012_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(1066..1512)
DNA (447bp) protein (149aa)
ABC transporter substrate binding protein Tax=GWA2_Rokubacteria_70_23_curated
ABC transporter substrate binding protein id=4748157 bin=GWC2_Methylomirabilis_70_24 species=Azospirillum brasilense genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ABC transporter substrate binding protein
13_1_40cm_4_scaffold_2012_4
Bacillus azotoformans, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2014..2454)
DNA (441bp) protein (147aa)
3-hydroxyanthranilate 3,4-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00825}; EC=1.13.11.6 {ECO:0000256|HAMAP-Rule:MF_00825};; 3-hydroxyanthranilate oxygenase {ECO:0000256|HAMAP-Rule:MF_00825}; 3-hydroxyan
3-hydroxyanthranilate 3,4-dioxygenase n=1 Tax=Bacillus bataviensis LMG 21833 RepID=K6D3L3_9BACI
3-hydroxyanthranilate 3,4-dioxygenase
13_1_40cm_4_scaffold_2012_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(2588..3697)
DNA (1110bp) protein (370aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative uncharacterized protein id=1700397 bin=GWA2_Methylomirabilis_73_35 species=Nostoc punctiforme genus=Nostoc taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2012_6
unknown

Not on your lists

3859..4074
DNA (216bp) protein (72aa)

This feature has no annotations

13_1_40cm_4_scaffold_2012_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4129..5355)
DNA (1227bp) protein (409aa)
2-hydroxyglutarate dehydrogenase (EC:1.1.99.2)
dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative oxidoreductase id=3696600 bin=GWC2_Methylomirabilis_70_16 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_2012_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5371..5760
DNA (390bp) protein (130aa)
putative monoamine oxidase regulatory protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Acyl dehydratase id=1700405 bin=GWA2_Methylomirabilis_73_35 species=Bacillus bataviensis genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MaoC domain-containing protein dehydratase
13_1_40cm_4_scaffold_2012_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5760..6620
DNA (861bp) protein (287aa)
Citryl-CoA lyase (EC:4.1.3.34); K01644 citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.6 4.1.3.34] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Citryl-CoA lyase id=4288061 bin=GWF2_Methylomirabilis_70_14 species=Mesorhizobium opportunistum genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
citE; citrate lyase subunit beta
13_1_40cm_4_scaffold_2012_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6647..7651
DNA (1005bp) protein (335aa)
zinc-binding alcohol dehydrogenase family protein; K13953 alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Alcohol dehydrogenase GroES domain protein id=4472067 bin=GWC2_Deltaproteobacteria_66_88 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
alcohol dehydrogenase
13_1_40cm_4_scaffold_2012_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7677..8972
DNA (1296bp) protein (432aa)
aminotransferase class-III; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glutamate-1-semialdehyde 2,1-aminomutase id=3772777 bin=GWC2_Methylomirabilis_70_16 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
aminotransferase class-III
13_1_40cm_4_scaffold_2012_12
unknown

Not on your lists

comp(8950..9123)
DNA (174bp) protein (58aa)

This feature has no annotations

13_1_40cm_4_scaffold_2012_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9657..10463
DNA (807bp) protein (269aa)
peptidase C39 n=1 Tax=Deinococcus sp. 2009 RepID=UPI0003B720EC
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptidase C39 related protein
13_1_40cm_4_scaffold_2012_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10405..11235)
DNA (831bp) protein (277aa)
alpha/beta hydrolase fold protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Predicted hydrolases or acyltransferases (Alpha/beta hydrolase superfamily) id=4527544 bin=GWC2_Methylomirabilis_70_16 species=uncultured Chloroflexi bacterium HF0200_06I16 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
abhydrolase 1
13_1_40cm_4_scaffold_2012_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(11502..12197)
DNA (696bp) protein (232aa)
Uncharacterized protein id=3301620 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_1_40cm_4_scaffold_2012_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12272..12508
DNA (237bp) protein (79aa)
id=14626173 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=14626173 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_2012_17
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

12505..12672
DNA (168bp) protein (56aa)
hypothetical protein SgloC_26550 Tax=GWA2_Rokubacteria_70_23_curated
13_1_40cm_4_scaffold_2012_18
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

12669..13667
DNA (999bp) protein (333aa)
TrkA-N domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
TrkA-N id=14626172 bin=bin7_NC10_sister species=Leeia oryzae genus=Leeia taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
TrkA-N domain-containing protein
13_1_40cm_4_scaffold_2012_19
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

13671..14603
DNA (933bp) protein (311aa)
Alkanesulfonate monooxygenase (EC:1.14.14.5)
Putative F420-dependent oxidoreductase id=4527440 bin=GWC2_Methylomirabilis_70_16 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
luciferase-like monooxygenase Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_4_scaffold_2012_20
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14608..15543)
DNA (936bp) protein (312aa)
Putative permease n=1 Tax=Microbacterium sp. TS-1 RepID=U2YL45_9MICO
Putative permease {ECO:0000313|EMBL:GAD33714.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
permease
13_1_40cm_4_scaffold_2012_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15653..16690)
DNA (1038bp) protein (346aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4527585 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_2012_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16690..17472)
DNA (783bp) protein (261aa)
crt; 3-hydroxybutyryl-CoA dehydratase (EC:4.2.1.55); K01715 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] Tax=GWA2_Rokubacteria_73_35_curated
crt; 3-hydroxybutyryl-CoA dehydratase (EC:4.2.1.55)
Enoyl-CoA hydratase/carnithine racemase id=2780641 bin=GWA2_Methylomirabilis_73_35 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2012_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(17469..18620)
DNA (1152bp) protein (384aa)
Formyl-CoA transferase (EC:2.8.3.16)
glucose dehydrogenase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Glucose dehydrogenase (GDH) id=2780646 bin=GWA2_Methylomirabilis_73_35 species=Thermoproteus uzoniensis genus=Thermoproteus taxon_order=Thermoproteales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2012_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18721..19839)
DNA (1119bp) protein (373aa)
acyl-CoA dehydrogenase domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Acyl-CoA dehydrogenase domain protein id=2780648 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl-CoA dehydrogenase domain-containing protein
13_1_40cm_4_scaffold_2012_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(19839..21047)
DNA (1209bp) protein (403aa)
acyl-CoA dehydrogenase domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Acyl-CoA dehydrogenase domain protein id=3159490 bin=GWF2_Methylomirabilis_70_14 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl-CoA dehydrogenase domain-containing protein
13_1_40cm_4_scaffold_2012_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21052..21870)
DNA (819bp) protein (273aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=2780661 bin=GWA2_Methylomirabilis_73_35 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_2012_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

21930..22526
DNA (597bp) protein (199aa)
LemA family protein id=4766718 bin=GWA2_Methylomirabilis_73_35 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
LemA family protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_2012_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

22606..23274
DNA (669bp) protein (223aa)
Beta-propeller domain-containing protein, methanol dehydrogenase id=4766717 bin=GWA2_Methylomirabilis_73_35 species=Microvirga sp. WSM3557 genus=Microvirga taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein; K06872 uncharacterized protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_2012_29
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

23268..23744
DNA (477bp) protein (159aa)
Putative uncharacterized protein id=4766716 bin=GWA2_Methylomirabilis_73_35 species=Robiginitalea biformata genus=Robiginitalea taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
protein containing DUF477
13_1_40cm_4_scaffold_2012_30
unknown

Not on your lists

23781..24101
DNA (321bp) protein (107aa)

This feature has no annotations

Displaying items 1-30 of 31 in total

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