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13_1_40cm_4_scaffold_200

Search features with annotation key words

Displaying items 1-30 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_200_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1..162
DNA (162bp) protein (54aa)
malate dehydrogenase; K00027 malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] Tax=GWA2_Rokubacteria_73_35_curated
maeA; malate dehydrogenase (oxaloacetate-decarboxylating) (EC:1.1.1.38); K00027 malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
Malate dehydrogenase (Oxaloacetate decarboxylating) id=2265641 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_200_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

159..872
DNA (714bp) protein (238aa)
glycosyl transferase family 2 protein (EC:2.4.1.-); K00729 dolichyl-phosphate beta-glucosyltransferase [EC:2.4.1.117] Tax=GWA2_Rokubacteria_73_35_curated
glycosyl transferase family 2 protein (EC:2.4.1.-)
Glycosyl transferase, family 2 id=2265642 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_200_3
unknown

Not on your lists

comp(779..1105)
DNA (327bp) protein (109aa)

This feature has no annotations

13_1_40cm_4_scaffold_200_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2173..2778
DNA (606bp) protein (202aa)
methyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Methyltransferase id=2265648 bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
SAM-dependent methyltransferase
13_1_40cm_4_scaffold_200_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2775..4937
DNA (2163bp) protein (721aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=2265650 bin=GWA2_Methylomirabilis_73_35 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_200_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4970..5626
DNA (657bp) protein (219aa)
nth; endonuclease III (EC:4.2.99.18) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
nth; endonuclease III (EC:4.2.99.18) id=14625396 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
nth; endonuclease III (EC:4.2.99.18)
13_1_40cm_4_scaffold_200_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


5690..6151
DNA (462bp) protein (154aa)
50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L13 id=2265654 bin=GWA2_Methylomirabilis_73_35 species=Bacillus azotoformans genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L13
13_1_40cm_4_scaffold_200_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


6152..6550
DNA (399bp) protein (133aa)
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
30S ribosomal protein S9 id=2265656 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S9
13_1_40cm_4_scaffold_200_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6550..7581
DNA (1032bp) protein (344aa)
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38); K00145 N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] Tax=GWA2_Rokubacteria_73_35_curated
N-acetyl-gamma-glutamyl-phosphate reductase id=2265658 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
N-acetyl-gamma-glutamyl-phosphate reductase
13_1_40cm_4_scaffold_200_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

7587..8807
DNA (1221bp) protein (407aa)
arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.1); K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_cur
Arginine biosynthesis bifunctional protein ArgJ id=2265660 bin=GWA2_Methylomirabilis_73_35 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ArgJ; N-acetylglutamate synthase
13_1_40cm_4_scaffold_200_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


8929..9693
DNA (765bp) protein (255aa)
30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
30S ribosomal protein S2 id=2265661 bin=GWA2_Methylomirabilis_73_35 species=Salimicrobium sp. MJ3 genus=Salimicrobium taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsB; 30S ribosomal protein S2
13_1_40cm_4_scaffold_200_12
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

10286..10987
DNA (702bp) protein (234aa)
pyrH; uridylate kinase; K09903 uridylate kinase [EC:2.7.4.22] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
pyrH; uridylate kinase (EC:2.7.4.22)
Uridylate kinase id=2265663 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_200_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

10993..11556
DNA (564bp) protein (188aa)
ribosome recycling factor; K02838 ribosome recycling factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Ribosome-recycling factor id=2265664 bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio fructosivorans genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribosome recycling factor
13_1_40cm_4_scaffold_200_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11579..12325
DNA (747bp) protein (249aa)
uppS; UDP pyrophosphate synthetase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
uppS; UDP pyrophosphate synthetase (EC:2.5.1.31)
Isoprenyl transferase id=2265665 bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_200_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12327..13223
DNA (897bp) protein (299aa)
cdsA; phosphatidate cytidylyltransferase; K00981 phosphatidate cytidylyltransferase [EC:2.7.7.41] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
CDP-diglyceride synthetase (EC:2.7.7.41)
Phosphatidate cytidylyltransferase id=2265690 bin=GWA2_Methylomirabilis_73_35 species=Heliobacterium modesticaldum genus=Heliobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_200_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

13220..14395
DNA (1176bp) protein (392aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267); K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267); K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] id=14625407 bin=bin7_NC10_sister species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin7_NC10_sister organism_group=NC10
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
13_1_40cm_4_scaffold_200_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

14392..15756
DNA (1365bp) protein (455aa)
rseP; regulator of sigma E protease (EC:3.4.24.-); K11749 regulator of sigma E protease [EC:3.4.24.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
rseP; regulator of sigma E protease (EC:3.4.24.-); K11749 regulator of sigma E protease [EC:3.4.24.-] id=14625408 bin=bin7_NC10_sister species=Thioalkalivibrio sp. ALJ24 genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
rseP; regulator of sigma E protease (EC:3.4.24.-)
13_1_40cm_4_scaffold_200_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

15766..16863
DNA (1098bp) protein (366aa)
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase id=4153759 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_200_19
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

16863..17195
DNA (333bp) protein (111aa)
Ferredoxin id=4153760 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ferredoxin Tax=GWC2_Rokubacteria_70_16_curated
ferredoxin
13_1_40cm_4_scaffold_200_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

17346..17813
DNA (468bp) protein (156aa)
Ribosome maturation factor RimP id=1723420 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_200_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17838..19142
DNA (1305bp) protein (435aa)
NusA antitermination factor; K02600 N utilization substance protein A Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NusA antitermination factor id=1723421 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NusA antitermination factor
13_1_40cm_4_scaffold_200_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19554..22094
DNA (2541bp) protein (847aa)
infB; translation initiation factor IF-2; K02519 translation initiation factor IF-2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Translation initiation factor IF-2 id=1723423 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
translation initiation factor IF-2
13_1_40cm_4_scaffold_200_23
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

22119..22409
DNA (291bp) protein (97aa)
Putative uncharacterized protein id=4153820 bin=GWC2_Methylomirabilis_70_16 species=Mahella australiensis genus=Mahella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein; K09764 hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_1_40cm_4_scaffold_200_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

22409..22762
DNA (354bp) protein (118aa)
Ribosome-binding factor A id=1723425 bin=GWA2_Methylomirabilis_73_35 species=Thermobacillus composti genus=Thermobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribosome-binding factor A Tax=GWA2_Rokubacteria_73_35_curated
rbfA; ribosome-binding factor A
13_1_40cm_4_scaffold_200_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

22759..23757
DNA (999bp) protein (333aa)
Exopolyphosphatase-like enzyme id=1723426 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
exopolyphosphatase-related proteins; K06881 phosphoesterase RecJ domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
phosphoesterase RecJ domain-containing protein
13_1_40cm_4_scaffold_200_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

23754..24683
DNA (930bp) protein (310aa)
tRNA pseudouridine synthase b; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] Tax=GWA2_Rokubacteria_73_35_curated
tRNA pseudouridine synthase B id=1723427 bin=GWA2_Methylomirabilis_73_35 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA pseudouridine synthase B
13_1_40cm_4_scaffold_200_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

24646..25563
DNA (918bp) protein (306aa)
FMN adenylyltransferase; riboflavin kinase (EC:2.7.7.2 2.7.1.26); K11753 riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Riboflavin biosynthesis protein RibF id=1723429 bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
riboflavin kinase/FMN adenylyltransferase
13_1_40cm_4_scaffold_200_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


25704..25973
DNA (270bp) protein (90aa)
30S ribosomal protein S15 id=1723473 bin=GWA2_Methylomirabilis_73_35 species=Clostridium ultunense genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15 Tax=GWA2_Rokubacteria_73_35_curated
30S ribosomal protein S15
13_1_40cm_4_scaffold_200_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

26104..28245
DNA (2142bp) protein (714aa)
pnp; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (EC:2.7.7.8) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pnp; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (EC:2.7.7.8) id=14625422 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pnp; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (EC:2.7.7.8)
13_1_40cm_4_scaffold_200_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

28257..29522
DNA (1266bp) protein (422aa)
insulinase family protein (EC:3.4.24.-)
ymxG; hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ymxG; hypothetical protein id=14625423 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Displaying items 1-30 of 63 in total

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