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13_1_40cm_4_scaffold_204

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_204_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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87..680
-----------------
DNA (594bp)
protein (198aa)
Sodium-transporting two-sector ATPase (EC:3.6.3.15) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Sodium-transporting two-sector ATPase (EC:3.6.3.15)
ATP synthase subunit b id=2324961 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_204_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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681..1229
-----------------
DNA (549bp)
protein (183aa)
F0F1 ATP synthase subunit delta (EC:3.6.3.14); K02113 F-type H+-transporting ATPase subunit delta [EC:3.6.3.14] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ATP synthase delta chain (EC:3.6.3.14)
ATP synthase subunit delta id=2324962 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_204_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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1400..2926
-----------------
DNA (1527bp)
protein (509aa)
atpA; ATP synthase subunit alpha, membrane-bound, F1 sector (EC:3.6.3.14) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
atpA; ATP synthase subunit alpha, membrane-bound, F1 sector (EC:3.6.3.14)
ATP synthase subunit alpha id=3212395 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_204_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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2938..3831
-----------------
DNA (894bp)
protein (298aa)
atpG; ATP synthase subunit gamma, membrane-bound, F1 sector (EC:3.6.3.14) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
atpG; ATP synthase subunit gamma, membrane-bound, F1 sector (EC:3.6.3.14)
ATP synthase gamma chain id=2324964 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_204_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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3828..5246
-----------------
DNA (1419bp)
protein (473aa)
atpD; ATP synthase subunit beta, membrane-bound, F1 sector (EC:3.6.3.14) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
atpD; ATP synthase subunit beta, membrane-bound, F1 sector (EC:3.6.3.14)
ATP synthase subunit beta id=3212391 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_204_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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5247..5657
-----------------
DNA (411bp)
protein (137aa)
atpC; ATP synthase subunit epsilon, membrane-bound, F1 sector (EC:3.6.3.14) Tax=GWA2_Rokubacteria_73_35_curated
atpC; ATP synthase subunit epsilon, membrane-bound, F1 sector (EC:3.6.3.14)
ATP synthase epsilon chain id=3299513 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_204_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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5872..6258
-----------------
DNA (387bp)
protein (129aa)
Two component transcriptional regulator, winged helix family id=3299511 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Transcriptional regulatory protein yycF Tax=GWA2_Rokubacteria_73_35_curated
Transcriptional regulatory protein yycF
13_1_40cm_4_scaffold_204_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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6243..6989
-----------------
DNA (747bp)
protein (249aa)
PAS/PAC sensor-containing diguanylate cyclase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Diguanylate cyclase with PAS/PAC sensor id=3299509 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_204_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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6937..7743
-----------------
DNA (807bp)
protein (269aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=3299507 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_204_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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7740..9212
-----------------
DNA (1473bp)
protein (491aa)
integral membrane sensor signal transduction histidine kinase; K11357 two-component system, cell cycle sensor histidine kinase DivJ [EC:2.7.13.3] Tax=GWA2_Rokubacteria_73_35_curated
Integral membrane sensor signal transduction histidine kinase id=3299505 bin=GWA2_Methylomirabilis_73_35 species=Xanthobacter autotrophicus genus=Xanthobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
kdpD; osmosensitive potassium channel sensor histidine kinase KdpD, KdpD and USP_OKCHK domain-containing
13_1_40cm_4_scaffold_204_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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9277..9525
-----------------
DNA (249bp)
protein (83aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3299399 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_204_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9525..9800
-----------------
DNA (276bp)
protein (92aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14625277 bin=bin7_NC10_sister species=Nitrospina sp. SCGC AAA288-L16 genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_204_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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9740..10393
-----------------
DNA (654bp)
protein (218aa)
3-polyprenyl-4-hydroxybenzoate decarboxylase id=2319271 bin=GWA2_Methylomirabilis_73_35 species=Citrobacter freundii genus=Citrobacter taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
3-octaprenyl-4-hydroxybenzoate carboxy-lyase
13_1_40cm_4_scaffold_204_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10386..11123
-----------------
DNA (738bp)
protein (246aa)
Glycosyltransferase id=2319272 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
family 2 glycosyl transferase Tax=GWA2_Rokubacteria_73_35_curated
family 2 glycosyl transferase
13_1_40cm_4_scaffold_204_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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11133..12095
-----------------
DNA (963bp)
protein (321aa)
oxidoreductase domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Oxidoreductase domain protein id=2319273 bin=GWA2_Methylomirabilis_73_35 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oxidoreductase domain-containing protein
13_1_40cm_4_scaffold_204_16
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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comp(12617..13552)
-----------------
DNA (936bp)
protein (312aa)
hypothetical protein n=1 Tax=Oscillatoria sp. PCC 10802 RepID=UPI0003658B78
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
13_1_40cm_4_scaffold_204_17
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(13521..14516)
-----------------
DNA (996bp)
protein (332aa)
Putative Fe-S oxidoreductase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LKP2_CHLTF
putative Fe-S oxidoreductase Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
putative Fe-S oxidoreductase
13_1_40cm_4_scaffold_204_18
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(14576..15487)
-----------------
DNA (912bp)
protein (304aa)
Putative uncharacterized protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LKP1_CHLTF
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_1_40cm_4_scaffold_204_19
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

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comp(15515..15703)
-----------------
DNA (189bp)
protein (63aa)
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
13_1_40cm_4_scaffold_204_20
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(15719..16861)
-----------------
DNA (1143bp)
protein (381aa)
Putative Fe-S oxidoreductase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LKP2_CHLTF
putative Fe-S oxidoreductase Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
putative Fe-S oxidoreductase
13_1_40cm_4_scaffold_204_21
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(16854..17765)
-----------------
DNA (912bp)
protein (304aa)
Radical SAM domain protein n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LKV1_SYNFM
putative Fe-S oxidoreductase Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
radical SAM domain-containing protein
13_1_40cm_4_scaffold_204_22
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(17758..18066)
-----------------
DNA (309bp)
protein (103aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
Putative uncharacterized protein id=4321924 bin=GWA2_Bacteroidetes_A19_40_15 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Bacteroidetes_A19_40_15 organism_group=Bacteroidetes
hypothetical protein
13_1_40cm_4_scaffold_204_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18199..19269)
-----------------
DNA (1071bp)
protein (357aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptidase S24/S26A/S26B, conserved region
13_1_40cm_4_scaffold_204_trna_1
unknown

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comp(19528..19611)
-----------------
DNA (84bp)
transferRNA
13_1_40cm_4_scaffold_204_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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19697..20083
-----------------
DNA (387bp)
protein (129aa)
smpB; SsrA-binding protein; K03664 SsrA-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
SsrA-binding protein id=2862716 bin=GWF2_Methylomirabilis_70_14 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
smpB; SsrA-binding protein
Displaying 25 items

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