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13_1_40cm_4_scaffold_2115

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Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2115_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1048..1713
DNA (666bp) protein (222aa)
TENA/THI-4 family; K03707 thiaminase (transcriptional activator TenA) [EC:3.5.99.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcriptional activator, TenA family id=3021538 bin=GWF2_Methylomirabilis_70_14 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
TENA/THI-4 family
13_1_40cm_4_scaffold_2115_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1718..2203
DNA (486bp) protein (162aa)
Uncharacterized protein id=1746153 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_4_scaffold_2115_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2372..3043
DNA (672bp) protein (224aa)
OmpA/MotB domain protein id=1746151 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
OmpA/MotB domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
OmpA/MotB domain-containing protein
13_1_40cm_4_scaffold_2115_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3099..3974)
DNA (876bp) protein (292aa)
haloalkane dehalogenase; K01563 haloalkane dehalogenase [EC:3.8.1.5] Tax=GWA2_Rokubacteria_73_35_curated
Alpha/beta hydrolase fold protein id=1746149 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
haloalkane dehalogenase
13_1_40cm_4_scaffold_2115_5
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

4076..5278
DNA (1203bp) protein (401aa)
major facilitator transporter id=14632909 bin=bin9_gal15 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin9_gal15 organism_group=GAL15
major facilitator transporter Tax=CSP1_3_Armatimonadetes
major facilitator transporter
13_1_40cm_4_scaffold_2115_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5349..5969
DNA (621bp) protein (207aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=1746145 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_2115_7
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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6026..6325
DNA (300bp) protein (100aa)
Putative transcriptional regulator, ArsR family protein id=4476338 bin=GWF2_Methylomirabilis_70_14 species=Cupriavidus sp. HPC(L) genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
arsR; putative arsenical resistance operon repressor Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_1_40cm_4_scaffold_2115_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6325..6645
DNA (321bp) protein (107aa)
id=4895587 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=4895587 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_2115_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6645..6929
DNA (285bp) protein (95aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=1746143 bin=GWA2_Methylomirabilis_73_35 species=Sagittula stellata genus=Sagittula taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_2115_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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6974..8164
DNA (1191bp) protein (397aa)
sugar phosphate permease Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Sugar phosphate permease id=3708852 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sugar phosphate permease
13_1_40cm_4_scaffold_2115_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8773..9084
DNA (312bp) protein (104aa)
ccdA; cytochrome c biogenesis protein CcdA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cytochrome c biogenesis protein, transmembrane region id=1746132 bin=GWA2_Methylomirabilis_73_35 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiol-disulfide isomerase
13_1_40cm_4_scaffold_2115_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9093..10616
DNA (1524bp) protein (508aa)
sensor histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Integral membrane sensor signal transduction histidine kinase id=1746130 bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
integral membrane sensor signal transduction histidine kinase
13_1_40cm_4_scaffold_2115_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10609..11289
DNA (681bp) protein (227aa)
OmpR family response regulator; K07658 two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DNA-binding response regulator id=1746127 bin=GWA2_Methylomirabilis_73_35 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two component transcriptional regulator, winged helix family
13_1_40cm_4_scaffold_2115_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11324..12280
DNA (957bp) protein (319aa)
yedY; exported heme-molybdoenzyme molybdopterin-containing subunit YedY; TAT export Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Sulfoxide reductase catalytic subunit YedY id=1746038 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yedY; exported heme-molybdoenzyme molybdopterin-containing subunit YedY; TAT export
13_1_40cm_4_scaffold_2115_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12542..13225
DNA (684bp) protein (228aa)
yedZ; heme-molybdoenzyme heme-containing subunit YedZ; cytochrome b subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sulfoxide reductase heme-binding subunit YedZ id=1746036 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yedZ; heme-molybdoenzyme heme-containing subunit YedZ; cytochrome b subunit
13_1_40cm_4_scaffold_2115_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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13239..14483
DNA (1245bp) protein (415aa)
Phosphonoacetate hydrolase id=1746034 bin=GWA2_Methylomirabilis_73_35 species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphonoacetate hydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
phosphonoacetate hydrolase
13_1_40cm_4_scaffold_2115_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

14527..15942
DNA (1416bp) protein (472aa)
peptidase, m16 (pitrilysin) family (EC:3.4.24.-); K07263 zinc protease [EC:3.4.24.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
M16B family peptidase (EC:3.4.24.-)
Putative Zn-dependent peptidase id=2874868 bin=GWC2_Methylomirabilis_70_16 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_2115_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15939..17222
DNA (1284bp) protein (428aa)
processing peptidase (EC:3.4.24.64) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
processing peptidase (EC:3.4.24.64)
Processing peptidase id=2874872 bin=GWC2_Methylomirabilis_70_16 species=Leptolyngbya sp. PCC 6406 genus=Leptolyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_2115_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17226..17456)
DNA (231bp) protein (77aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=3461019 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2115_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17747..18706
DNA (960bp) protein (320aa)
lipoprotein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative lipoprotein id=3461021 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lipoprotein
13_1_40cm_4_scaffold_2115_21
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

18708..19643
DNA (936bp) protein (312aa)
Putative uncharacterized protein id=2475294 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_1_40cm_4_scaffold_2115_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19791..21140
DNA (1350bp) protein (450aa)
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C1V3_DESTA id=5223401 bin=16ft_combo_ws3_JS1 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Fis family transcriptional regulator
13_1_40cm_4_scaffold_2115_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21410..22795
DNA (1386bp) protein (462aa)
Pc22g03720 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3461025 bin=GWA2_Methylomirabilis_73_35 species=Leishmania mexicana genus=Leishmania taxon_order=Kinetoplastida taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2115_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22807..24369
DNA (1563bp) protein (521aa)
Response regulator receiver modulated metal dependent phosphohydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Response regulator receiver modulated metal dependent phosphohydrolase id=3461027 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Response regulator receiver modulated metal dependent phosphohydrolase
13_1_40cm_4_scaffold_2115_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

24366..24746
DNA (381bp) protein (127aa)
spo0F; stage 0 sporulation protein F (EC:2.7.3.-); K02490 two-component system, response regulator, stage 0 sporulation protein F Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sporulation initiation phosphotransferase F (Stage 0 sporulation protein F) id=3461031 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
CheY-like receiver
13_1_40cm_4_scaffold_2115_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

24758..25552
DNA (795bp) protein (265aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Methyltransferase type 11 id=3461034 bin=GWA2_Methylomirabilis_73_35 species=Streptomyces hygroscopicus genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
methylase involved in ubiquinone/menaquinone biosynthesis
13_1_40cm_4_scaffold_2115_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

25640..26353
DNA (714bp) protein (238aa)
ubiG; 3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64)
type 11 methyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative methyltransferase protein id=3461244 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2115_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

26411..27112
DNA (702bp) protein (234aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_4_scaffold_2115_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

27125..27802
DNA (678bp) protein (226aa)
acetyltransferase, ribosomal protein N-acetylase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
acetyltransferase id=14626494 bin=bin7_NC10_sister species=Paenibacillus polymyxa genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
acetyltransferase, ribosomal protein N-acetylase
13_1_40cm_4_scaffold_2115_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

27789..29873
DNA (2085bp) protein (695aa)
putative two-component hybrid sensor and regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative two-component hybrid sensor and regulator id=14626495 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Parcubacteria tax=bin7_NC10_sister organism_group=NC10
putative two-component hybrid sensor and regulator
Displaying items 1-30 of 33 in total

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