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13_1_40cm_4_scaffold_2208

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2208_1
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

2..1027
-----------------
DNA (1026bp)
protein (342aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB47_GEMAT
clpX; ATP-dependent Clp protease ATP-binding subunit ClpX; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
ATP-dependent Clp protease ATP-binding subunit clpX
13_1_40cm_4_scaffold_2208_2
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

1084..2169
-----------------
DNA (1086bp)
protein (362aa)
Glycosyltransferase, WbnK-like family id=4814989 bin=GWC2_Proteo_65_14_Ab886 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
glgA1; glycosyl transferase
Tax=BJP_IG2069_Ignavibacteriae_38_11
13_1_40cm_4_scaffold_2208_3
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

2340..2834
-----------------
DNA (495bp)
protein (165aa)
Probable GTP-binding protein EngB n=2 Tax=Syntrophomonas RepID=ENGB_SYNWW
GTP-binding protein; K03978 GTP-binding protein Tax=GWC2_Gemmatimonadetes_71_10_curated
GTP-binding protein
13_1_40cm_4_scaffold_2208_4
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(2865..3845)
-----------------
DNA (981bp)
protein (327aa)
ApbE family lipoprotein id=4940723 bin=GWC2_Ignavibacteria_56_12 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
ApbE family lipoprotein; K03734 thiamine biosynthesis lipoprotein Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
ApbE family lipoprotein
13_1_40cm_4_scaffold_2208_5
Flavobacteria bacterium MS024-2A, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3826..4341)
-----------------
DNA (516bp)
protein (172aa)
Uncharacterized protein n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BK09_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEG40897.1}; TaxID=487796 species="Bacteria; Bacteroidetes; Flavobacteriia.;" source="Flavobacteria bacterium (strain MS024-2A).;"
hypothetical protein
13_1_40cm_4_scaffold_2208_6
Melioribacter roseus, Melioribacter, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(4338..4811)
-----------------
DNA (474bp)
protein (158aa)
FMN-binding protein n=1 Tax=Melioribacter roseus (strain P3M) RepID=I7A5K4_MELRP
FMN-binding protein
FMN-binding protein {ECO:0000313|EMBL:AFN75176.1}; TaxID=1191523 species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Melioribacteraceae; Melioribacter.;" source="Melioribacter roseu
13_1_40cm_4_scaffold_2208_7
Mangrovimonas yunxiaonensis, Mangrovimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(4813..5934)
-----------------
DNA (1122bp)
protein (374aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLS0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KFB00783.1}; TaxID=1197477 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Mangrovimonas.;" source="Mangrovimonas yunxi
hypothetical protein
13_1_40cm_4_scaffold_2208_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

6040..8142
-----------------
DNA (2103bp)
protein (701aa)
Multi-sensor hybrid histidine kinase n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8GBT4_CHLAD
multi-sensor hybrid histidine kinase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
multi-sensor hybrid histidine kinase
13_1_40cm_4_scaffold_2208_9
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(8064..8453)
-----------------
DNA (390bp)
protein (130aa)
Putative methylated DNA-protein cysteine methyltransferase n=1 Tax=Oscillatoriales cyanobacterium JSC-12 RepID=K8GG59_9CYAN
methylated-DNA--protein-cysteine methyltransferase; K07443 methylated-DNA-protein-cysteine methyltransferase related protein Tax=CG_Anaero_02
Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding protein
13_1_40cm_4_scaffold_2208_10
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(8525..8983)
-----------------
DNA (459bp)
protein (153aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB51_GEMAT
NUDIX family hydrolase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
NUDIX hydrolase
13_1_40cm_4_scaffold_2208_11
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9005..9358)
-----------------
DNA (354bp)
protein (118aa)
PhoP family transcriptional regulator n=1 Tax=Anaeromusa acidaminophila RepID=UPI000367FD4D
type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Tax=GWC2_Gemmatimonadetes_71_10_curated
two component transcriptional regulator, winged helix family
13_1_40cm_4_scaffold_2208_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(9325..11214)
-----------------
DNA (1890bp)
protein (630aa)
type II secretion system protein E; K02652 type IV pilus assembly protein PilB Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Response regulator receiver protein id=1943209 bin=GWB2_Elusimicrobium_63_22 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Elusimicrobium_63_22 organism_group=Elusimicrobia organism_desc=Good -
general secretory pathway protein E
13_1_40cm_4_scaffold_2208_13
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(11338..13389)
-----------------
DNA (2052bp)
protein (684aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A514_GEMAT
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_40cm_4_scaffold_2208_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

13622..14872
-----------------
DNA (1251bp)
protein (417aa)
trpE; anthranilate synthase component I (EC:4.1.3.27); K01657 anthranilate synthase component I [EC:4.1.3.27] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Anthranilate synthase component I n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB52_GEMAT
anthranilate synthase component I
13_1_40cm_4_scaffold_2208_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

14907..16523
-----------------
DNA (1617bp)
protein (539aa)
cya; adenylate cyclase (EC:4.6.1.1); K01768 adenylate cyclase [EC:4.6.1.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
cya; adenylate cyclase (EC:4.6.1.1)
Adenylate cyclase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB53_GEMAT
13_1_40cm_4_scaffold_2208_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(16505..17077)
-----------------
DNA (573bp)
protein (191aa)
Maf-like protein A176_06846 n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2S0F5_9DELT
Septum formation protein Maf
Maf-like protein J421_3871 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_2208_17
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(17074..17523)
-----------------
DNA (450bp)
protein (150aa)
D-tyrosyl-tRNA(Tyr) deacylase; K07560 D-tyrosyl-tRNA(Tyr) deacylase [EC:3.1.-.-] Tax=RBG_16_Acidobacteria_68_9_curated
D-tyrosyl-tRNA(Tyr) deacylase; K07560 D-tyrosyl-tRNA(Tyr) deacylase [EC:3.1.-.-] id=7716909 bin=BACIGN_2 species=Thermobacillus composti genus=Thermobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=BACIGN_2 organism_group=Unknown_CP
D-tyrosyl-tRNA(Tyr) deacylase
13_1_40cm_4_scaffold_2208_18
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(17661..19493)
-----------------
DNA (1833bp)
protein (611aa)
glmS; glucosamine--fructose-6-phosphate aminotransferase (EC:2.6.1.16); K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_7
glmS; glucosamine--fructose-6-phosphate aminotransferase (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB63_GEMAT
13_1_40cm_4_scaffold_2208_19
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(19478..20860)
-----------------
DNA (1383bp)
protein (461aa)
glmM; phosphoglucosamine mutase (EC:5.4.2.10); K01840 phosphomannomutase [EC:5.4.2.8] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Phosphoglucosamine mutase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB64_GEMAT
Phosphoglucosamine mutase, archaeal-related protein
13_1_40cm_4_scaffold_2208_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(20870..21793)
-----------------
DNA (924bp)
protein (308aa)
Putative two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB66_GEMAT
putative two-component response regulator Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
response regulator receiver
13_1_40cm_4_scaffold_2208_21
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

21951..23126
-----------------
DNA (1176bp)
protein (392aa)
metC; cystathionine beta-lyase (EC:4.4.1.8); K01758 cystathionine gamma-lyase [EC:4.4.1.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Cystathionine beta-lyase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB67_GEMAT
Cys/Met metabolism pyridoxal-phosphate-dependent protein
13_1_40cm_4_scaffold_2208_22
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

23293..24291
-----------------
DNA (999bp)
protein (333aa)
Peptidase M48 family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB68_GEMAT
peptidase M48 family protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
peptidase M48 family protein
13_1_40cm_4_scaffold_2208_23
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

24288..25583
-----------------
DNA (1296bp)
protein (432aa)
phosphoribosylamine/glycine ligase; K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MIW9_RHOM4
13_1_40cm_4_scaffold_2208_24
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

25561..26388
-----------------
DNA (828bp)
protein (276aa)
mutM; formamidopyrimidine-DNA glycosylase/AP lyase (EC:3.2.2.23 4.2.99.18); K10563 formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
mutM; formamidopyrimidine-DNA glycosylase/AP lyase (EC:3.2.2.23 4.2.99.18)
Formamidopyrimidine-DNA glycosylase/AP lyase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB70_GEMAT
13_1_40cm_4_scaffold_2208_25
RBG_16_Caldithrix_48_16_curated, Caldithrix, Bacteria

Not on your lists

26736..27590
-----------------
DNA (855bp)
protein (285aa)
Cation/multidrug efflux pump n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0MLP3_9BACT
AcrB/AcrD/AcrF family protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family Tax=RBG_16_Caldithrix_48_16_curated
multidrug transporter AcrB
Displaying 25 items

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