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13_1_40cm_4_scaffold_2235

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2235_1
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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1..1536
DNA (1536bp) protein (512aa)
rpoB; DNA-directed RNA polymerase beta subunit (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
rpoB; DNA-directed RNA polymerase beta subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6N7_GEMAT
13_1_40cm_4_scaffold_2235_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

1555..1950
DNA (396bp) protein (132aa)
rpoC; DNA-directed RNA polymerase beta' subunit (EC:2.7.7.6); K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
DNA-directed RNA polymerase subunit beta' n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6N8_GEMAT
DNA-directed RNA polymerase subunit beta
13_1_40cm_4_scaffold_2235_3
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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1947..5786
DNA (3840bp) protein (1280aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase
DNA-directed RNA polymerase subunit beta' n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6N8_GEMAT
DNA-directed RNA polymerase subunit beta
13_1_40cm_4_scaffold_2235_4
unknown

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5936..6454
DNA (519bp) protein (173aa)

This feature has no annotations

13_1_40cm_4_scaffold_2235_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(6666..9380)
DNA (2715bp) protein (905aa)
hypothetical protein id=24475677 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
13_1_40cm_4_scaffold_2235_6
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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9537..9920
DNA (384bp) protein (128aa)
30S ribosomal protein S12 n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LHQ4_9BACT
rpsL; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 Tax=GWC2_Gemmatimonadetes_71_10_curated
30S ribosomal protein S12
13_1_40cm_4_scaffold_2235_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


9917..10387
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=RS7_GEMAT
rpsG; 30S ribosomal protein S7; K02992 small subunit ribosomal protein S7 Tax=RBG_16_Gemmatimonadetes_66_8_curated
ribosomal protein S7
13_1_40cm_4_scaffold_2235_8
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

11135..12622
DNA (1488bp) protein (496aa)
Elongation factor G n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=EFG_GEMAT
translation elongation factor G
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_2235_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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13187..13951
DNA (765bp) protein (255aa)
Elongation factor Tu n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=EFTU_GEMAT
tuf; elongation factor Tu; K02358 elongation factor Tu Tax=RBG_16_Gemmatimonadetes_66_8_curated
translation elongation factor Tu
13_1_40cm_4_scaffold_2235_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists


13990..14259
DNA (270bp) protein (90aa)
30S ribosomal protein S10 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6Q4_GEMAT
30S ribosomal protein S10
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_2235_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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14298..14894
DNA (597bp) protein (199aa)
50S ribosomal protein L3 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6Q5_GEMAT
rplC; 50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 Tax=RBG_16_Gemmatimonadetes_66_8_curated
Ribosomal protein L3
13_1_40cm_4_scaffold_2235_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists


14887..15054
DNA (168bp) protein (56aa)
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4
13_1_40cm_4_scaffold_2235_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists


15132..15521
DNA (390bp) protein (130aa)
50S ribosomal protein L4 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6Q6_GEMAT
ribosomal protein L4/L1e
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_2235_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists


15514..15801
DNA (288bp) protein (96aa)
50S ribosomal protein L23 n=2 Tax=Anaeromyxobacter RepID=RL23_ANAD2
rplW; 50S ribosomal protein L23; K02892 large subunit ribosomal protein L23 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Ribosomal protein L25/L23
13_1_40cm_4_scaffold_2235_15
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists


15803..16642
DNA (840bp) protein (280aa)
50S ribosomal protein L2 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=RL2_GEMAT
rplB; 50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
rplB; 50S ribosomal protein L2
13_1_40cm_4_scaffold_2235_16
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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16661..16978
DNA (318bp) protein (106aa)
30S ribosomal protein S19 n=1 Tax=Latescibacteria bacterium SCGC AAA252-D10 RepID=UPI00037B774C
30S ribosomal protein S19; K02965 small subunit ribosomal protein S19 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
30S ribosomal protein S19
13_1_40cm_4_scaffold_2235_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


16982..17476
DNA (495bp) protein (165aa)
50S ribosomal protein L22 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6R0_GEMAT
rplV; 50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 Tax=RBG_16_Gemmatimonadetes_66_8_curated
rplV; 50S ribosomal protein L22
13_1_40cm_4_scaffold_2235_18
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


17477..18136
DNA (660bp) protein (220aa)
30S ribosomal protein S3 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=RS3_GEMAT
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 Tax=RBG_16_Gemmatimonadetes_66_8_curated
rpsC; 30S ribosomal protein S3
13_1_40cm_4_scaffold_2235_19
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists


18146..18559
DNA (414bp) protein (138aa)
50S ribosomal protein L16 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=RL16_GEMAT
rplP; 50S ribosomal protein L16; K02878 large subunit ribosomal protein L16 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
50S ribosomal protein L16
13_1_40cm_4_scaffold_2235_20
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


18561..18761
DNA (201bp) protein (67aa)
50S ribosomal protein L29 n=1 Tax=Sulfobacillus thermosulfidooxidans RepID=UPI0003778E91
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 Tax=RBG_16_Gemmatimonadetes_66_8_curated
rpmC; 50S ribosomal protein L29
13_1_40cm_4_scaffold_2235_21
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists


18758..19006
DNA (249bp) protein (83aa)
30S ribosomal protein S17 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6R4_GEMAT
30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Ribosomal protein S17
13_1_40cm_4_scaffold_2235_22
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists


19026..19391
DNA (366bp) protein (122aa)
50S ribosomal protein L14 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=RL14_GEMAT
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ribosomal protein L14
13_1_40cm_4_scaffold_2235_23
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists


19393..19779
DNA (387bp) protein (129aa)
50S ribosomal protein L24 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6R6_GEMAT
rplX; 50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ribosomal protein L24
13_1_40cm_4_scaffold_2235_24
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists


19787..20569
DNA (783bp) protein (261aa)
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Ribosomal protein L5
50S ribosomal protein L5 id=4034737 bin=GWC2_Nitrospirae_57_13 species=Hyphomicrobium denitrificans genus=Hyphomicrobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
13_1_40cm_4_scaffold_2235_25
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists


20581..20766
DNA (186bp) protein (62aa)
30S ribosomal protein S14 n=1 Tax=candidate division WS3 bacterium JGI 0000059-A10 RepID=UPI00035C48FC
30S ribosomal protein S14; K02954 small subunit ribosomal protein S14 Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_40cm_4_scaffold_2235_26
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists


20783..21178
DNA (396bp) protein (132aa)
30S ribosomal protein S8 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6R9_GEMAT
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
rpsH; 30S ribosomal protein S8
13_1_40cm_4_scaffold_2235_27
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists


21185..21730
DNA (546bp) protein (182aa)
50S ribosomal protein L6 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=RL6_GEMAT
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 Tax=GWC2_Gemmatimonadetes_71_10_curated
Ribosomal protein L6, subgroup
13_1_40cm_4_scaffold_2235_28
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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21734..22105
DNA (372bp) protein (124aa)
50S ribosomal protein L18 n=4 Tax=Paenibacillus RepID=F8FA30_PAEMK id=5223098 bin=16ft_combo_ws3_JS1 species=unknown genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18 Tax=GWC2_Gemmatimonadetes_71_10_curated
ribosomal protein L18
Displaying 28 items

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