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13_1_40cm_4_scaffold_2256

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2256_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1..2127
DNA (2127bp) protein (709aa)
carB; carbamoyl phosphate synthase, large subunit (EC:6.3.5.5) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
carB; carbamoyl phosphate synthase, large subunit (EC:6.3.5.5) id=14625178 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
carB; carbamoyl phosphate synthase, large subunit (EC:6.3.5.5)
13_1_40cm_4_scaffold_2256_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2120..2896
DNA (777bp) protein (259aa)
orotidine-5'-phosphate decarboxylase (EC:4.1.1.23); K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] Tax=GWA2_Rokubacteria_73_35_curated
orotidine-5'-phosphate decarboxylase (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase id=4815544 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2256_3
Methanocaldococcus jannaschii, Methanocaldococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

Not on your lists

comp(2893..3315)
DNA (423bp) protein (141aa)
Uncharacterized protein MJ1340; TaxID=243232 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus.;" source="Methanocaldococcus jannaschii (strain
hypothetical protein; K07131
13_1_40cm_4_scaffold_2256_4
GWB2_Elusimicrobia_63_22_curated, Elusimicrobia, Bacteria

Not on your lists

comp(3312..4163)
DNA (852bp) protein (284aa)
TPR repeat-containing protein id=1705742 bin=GWB2_Elusimicrobium_63_22 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Elusimicrobium_63_22 organism_group=Elusimicrobia organism_desc=Good -
hypothetical protein Tax=GWB2_Elusimicrobia_63_22_curated
13_1_40cm_4_scaffold_2256_5
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(4177..6420)
DNA (2244bp) protein (748aa)
Type IV-A pilus assembly ATPase PilB id=3773045 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
type II secretion system protein E; K02652 type IV pilus assembly protein PilB Tax=GWC2_Rokubacteria_70_16_curated
type II secretion system protein E
13_1_40cm_4_scaffold_2256_6
RBG_16_Zixibacteria_48_11_curated, Zixibacteria, Bacteria

Not on your lists

comp(6395..6835)
DNA (441bp) protein (147aa)
roadblock/LC7 family protein Tax=RBG_16_Zixibacteria_48_11_curated
Roadblock/LC7 family protein id=14624097 bin=bin5_DeltaP species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
MglB protein
13_1_40cm_4_scaffold_2256_7
Lentisphaera araneosa, Lentisphaera, Lentisphaerales, Lentisphaeria, Lentisphaerae, Bacteria

Not on your lists

comp(6835..7443)
DNA (609bp) protein (203aa)
MglA protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DTW3_9BACT
MglA protein {ECO:0000313|EMBL:EDM24932.1}; TaxID=313628 species="Bacteria; Lentisphaerae; Lentisphaeria; Lentisphaerales; Lentisphaeraceae; Lentisphaera.;" source="Lentisphaera araneosa HTCC2155.;"
Gliding motility protein
13_1_40cm_4_scaffold_2256_8
Trypanosoma cruzi, Trypanosoma, Kinetoplastida, Eukaryota

Not on your lists

comp(7444..9543)
DNA (2100bp) protein (700aa)
PREDICTED: uncharacterized protein LOC100208015 n=1 Tax=unknown RepID=UPI0002B4A5BA
Uncharacterized protein {ECO:0000313|EMBL:EAN88854.1}; TaxID=353153 species="Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Trypanosoma; Schizotrypanum.;" source="Trypanosoma cruzi (strain C
OmpA family protein
13_1_40cm_4_scaffold_2256_9
Meiothermus silvanus, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(9545..10354)
DNA (810bp) protein (270aa)
Response regulator receiver protein n=1 Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7BG23_MEISD
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:ADH63726.1}; TaxID=526227 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus silvanus (
13_1_40cm_4_scaffold_2256_10
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(10351..11298)
DNA (948bp) protein (316aa)
response regulator receiver protein id=14428717 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
response regulator receiver protein Tax=CSP1_5_NC10
RNA polymerase sigma factor
13_1_40cm_4_scaffold_2256_11
Meiothermus silvanus, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(11295..14171)
DNA (2877bp) protein (959aa)
CheA signal transduction histidine kinase n=1 Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7BG21_MEISD
CheA signal transduction histidine kinase
CheA signal transduction histidine kinase {ECO:0000313|EMBL:ADH63724.1}; TaxID=526227 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus silv
13_1_40cm_4_scaffold_2256_12
Deinococcus radiodurans, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(14182..15141)
DNA (960bp) protein (320aa)
Methyl-accepting chemotaxis protein n=1 Tax=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) RepID=Q9RYG3_DEIRA
methyl-accepting chemotaxis protein
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:AAF12431.1}; TaxID=243230 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus ra
13_1_40cm_4_scaffold_2256_13
unknown

Not on your lists

15186..15521
DNA (336bp) protein (112aa)

This feature has no annotations

13_1_40cm_4_scaffold_2256_14
GWB2_Nitrospirae_47_37_curated, Nitrospirae, Bacteria

Not on your lists

comp(15916..17061)
DNA (1146bp) protein (382aa)
Putative uncharacterized protein id=2284027 bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
hypothetical protein Tax=GWB2_Nitrospirae_47_37_curated
hypothetical protein
13_1_40cm_4_scaffold_2256_15
Deinococcus peraridilitoris, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(17706..18068)
DNA (363bp) protein (121aa)
histidine kinase n=1 Tax=Meiothermus timidus RepID=UPI00037A26B3
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains {ECO:0000313|EMBL:AFZ65849.1}; TaxID=937777 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Dein
13_1_40cm_4_scaffold_2256_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

18302..18880
DNA (579bp) protein (193aa)
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10); K00762 orotate phosphoribosyltransferase [EC:2.4.2.10] Tax=GWA2_Rokubacteria_73_35_curated
Orotate phosphoribosyltransferase id=4815545 bin=GWA2_Methylomirabilis_73_35 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
orotate phosphoribosyltransferase
13_1_40cm_4_scaffold_2256_17
Thermodesulfobium narugense, Thermodesulfobium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18884..19204)
DNA (321bp) protein (107aa)
Uncharacterized protein {ECO:0000313|EMBL:AEE14500.1}; Flags: Precursor;; TaxID=747365 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermodesulfobiaceae; Thermodesulfobium.;" sou
hypothetical protein
13_1_40cm_4_scaffold_2256_18
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19290..19640
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Geopsychrobacter electrodiphilus RepID=UPI00036C87FD
hypothetical protein; K09137 hypothetical protein Tax=GWC2_Geobacteraceae_53_11_curated
hypothetical protein
13_1_40cm_4_scaffold_2256_19
Dehalogenimonas sp. WBC-2, Dehalogenimonas, Dehalococcoidia, Chloroflexi, Bacteria

Not on your lists

comp(19659..20003)
DNA (345bp) protein (115aa)
Uncharacterized protein {ECO:0000313|EMBL:AKG53885.1}; TaxID=943347 species="Bacteria; Chloroflexi; Dehalococcoidia; Dehalogenimonas.;" source="Dehalogenimonas sp. WBC-2.;"
hypothetical protein
Uncharacterized protein id=2883857 bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
13_1_40cm_4_scaffold_2256_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(20006..20395)
DNA (390bp) protein (130aa)
Putative fluoride ion transporter CrcB n=1 Tax=Geobacter sp. (strain M21) RepID=CRCB_GEOSM
camphor resistance protein CrcB; K06199 CrcB protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
camphor resistance protein CrcB
13_1_40cm_4_scaffold_2256_21
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(20678..21895)
DNA (1218bp) protein (406aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI0003617279
sodium/hydrogen exchanger Tax=GWA2_Rokubacteria_70_23_curated
potassium transporter Kef
13_1_40cm_4_scaffold_2256_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21895..22665)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I6B9_CALAS
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_4_scaffold_2256_23
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22761..23897)
DNA (1137bp) protein (379aa)
Major facilitator superfamily MFS_1 n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EK23_9RHIZ
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CCV04707.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesor
major facilitator superfamily protein
13_1_40cm_4_scaffold_2256_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23981..24337)
DNA (357bp) protein (119aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_4_scaffold_2256_25
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(24334..25119)
DNA (786bp) protein (262aa)
hypothetical protein; K02050 NitT/TauT family transport system permease protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
hypothetical protein; K02050 NitT/TauT family transport system permease protein id=14625185 bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ABC transporter permease
13_1_40cm_4_scaffold_2256_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(25149..25862)
DNA (714bp) protein (238aa)
ABC transporter ATP-binding protein; K02049 NitT/TauT family transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ABC transporter ATP-binding protein; K02049 NitT/TauT family transport system ATP-binding protein id=14625186 bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ABC transporter ATP-binding protein
13_1_40cm_4_scaffold_2256_27
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(25937..26971)
DNA (1035bp) protein (345aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein id=14625187 bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_2256_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

27109..27993
DNA (885bp) protein (295aa)
Putative uncharacterized protein id=3315427 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_2256_29
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

27986..28618
DNA (633bp) protein (211aa)
gmk; guanylate kinase (EC:2.7.4.8) Tax=GWA2_Rokubacteria_73_35_curated
guanylate kinase (EC:2.7.4.8)
Guanylate kinase id=3315421 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2256_30
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

28618..28833
DNA (216bp) protein (72aa)
DNA-directed RNA polymerase subunit omega id=3315419 bin=GWA2_Methylomirabilis_73_35 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA-directed RNA polymerase subunit omega Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DNA-directed RNA polymerase subunit omega
Displaying items 1-30 of 33 in total

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