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13_1_40cm_4_scaffold_2332

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2332_1
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1..369
DNA (369bp) protein (123aa)
Acetamidase/Formamidase n=1 Tax=Alicyclobacillus acidocaldarius (strain Tc-4-1) RepID=F8IEJ7_ALIAT
Acetamidase/Formamidase
Acetamidase/Formamidase {ECO:0000313|EMBL:AEJ42711.1}; TaxID=1048834 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus acidocaldariu
13_1_40cm_4_scaffold_2332_2
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(366..1553)
DNA (1188bp) protein (396aa)
FAD-dependent pyridine nucleotide-disulphide oxidoreductase n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AS94_RUBXD
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
FAD-dependent pyridine nucleotide-disulphide oxidoreductase {ECO:0000313|EMBL:ABG05734.1}; Flags: Precursor;; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacte
13_1_40cm_4_scaffold_2332_3
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1546..2121)
DNA (576bp) protein (192aa)
Putative Uncharacterized short-chain type dehydrogenase/reductase y4lA {ECO:0000313|EMBL:CDI02470.1}; EC=1.-.-.- {ECO:0000313|EMBL:CDI02470.1};; TaxID=1400863 species="Bacteria; Proteobacteria; Gammap
Short-chain dehydrogenase/reductase SDR n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TFZ9_9CHLR
dehydrogenase
13_1_40cm_4_scaffold_2332_4
Corynebacterium maris, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2166..2990)
DNA (825bp) protein (275aa)
Sugar transferase n=1 Tax=Corynebacterium maris DSM 45190 RepID=S5TIE3_9CORY
sugar transferase
Sugar transferase {ECO:0000313|EMBL:AGS34661.1}; TaxID=1224163 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium maris DSM 45190.;"
13_1_40cm_4_scaffold_2332_5
CG_Delta_03, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3191..3781)
DNA (591bp) protein (197aa)
folE; GTP cyclohydrolase I (EC:3.5.4.16); K01495 GTP cyclohydrolase I [EC:3.5.4.16] Tax=CG_Delta_03
GTP cyclohydrolase I (EC:3.5.4.16)
GTP cyclohydrolase 1 n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8UX10_TERSS
13_1_40cm_4_scaffold_2332_6
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(3778..4200)
DNA (423bp) protein (141aa)
6-carboxy-5,6,7,8-tetrahydropterin synthase {ECO:0000256|PIRNR:PIRNR006113}; EC=4.-.-.- {ECO:0000256|PIRNR:PIRNR006113};; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incerta
6-carboxy-5,6,7,8-tetrahydropterin synthase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SED0_RHOMR
hypothetical protein
13_1_40cm_4_scaffold_2332_7
unknown

Not on your lists

comp(4215..4838)
DNA (624bp) protein (208aa)

This feature has no annotations

13_1_40cm_4_scaffold_2332_8
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

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comp(4879..5739)
DNA (861bp) protein (287aa)
adenylate cyclase (EC:4.6.1.1) id=24430910 bin=RBG_19FT_COMBO_GAL15_69_19 species=Modestobacter marinus genus=Modestobacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
adenylate cyclase (EC:4.6.1.1) Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
adenylate cyclase (EC:4.6.1.1)
13_1_40cm_4_scaffold_2332_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5819..7150)
DNA (1332bp) protein (444aa)
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000313|EMBL:ABE39598.1}; EC=5.4.3.8 {ECO:0000313|EMBL:ABE39598.1};; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bra
Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q137Z1_RHOPS
class III aminotransferase
13_1_40cm_4_scaffold_2332_10
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7155..7703)
DNA (549bp) protein (183aa)
Carboxymuconolactone decarboxylase n=2 Tax=Rhodococcus RepID=K8XIK2_RHOOP
Carboxymuconolactone decarboxylase {ECO:0000313|EMBL:EKT81428.1}; TaxID=1129896 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus M213.;"
hypothetical protein
13_1_40cm_4_scaffold_2332_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7801..9003
DNA (1203bp) protein (401aa)
histidine kinase (EC:2.7.13.3)
Histidine kinase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y592_LEPCP
two-component hybrid sensor and regulator Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
13_1_40cm_4_scaffold_2332_12
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

9000..9455
DNA (456bp) protein (152aa)
PAS/PAC sensor signal transduction histidine kinase Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
PAS domain S-box id=1914722 bin=GWD2_Nitrospirae-related_57_8 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
fgrK; sensor histidine kinase of FgrL, PAS domain-containing
13_1_40cm_4_scaffold_2332_13
Micromonospora sp. ATCC 39149, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9480..10415
DNA (936bp) protein (312aa)
Alcohol dehydrogenase n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RBM2_9ACTO
Alcohol dehydrogenase {ECO:0000313|EMBL:EEP69785.1}; TaxID=219305 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. ATCC 39149.;"
NADPH:quinone reductase-related Zn-dependent oxidoreductase
13_1_40cm_4_scaffold_2332_14
unknown

Not on your lists

comp(10441..10830)
DNA (390bp) protein (130aa)

This feature has no annotations

13_1_40cm_4_scaffold_2332_15
unknown

Not on your lists

comp(10963..12342)
DNA (1380bp) protein (460aa)

This feature has no annotations

13_1_40cm_4_scaffold_2332_16
unknown

Not on your lists

comp(12562..12882)
DNA (321bp) protein (107aa)

This feature has no annotations

13_1_40cm_4_scaffold_2332_17
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13019..14134
DNA (1116bp) protein (372aa)
talB; transaldolase (EC:2.2.1.2)
Transaldolase {ECO:0000256|SAAS:SAAS00118670, ECO:0000313|EMBL:CCH87794.1}; EC=2.2.1.2 {ECO:0000256|SAAS:SAAS00118670, ECO:0000313|EMBL:CCH87794.1};; TaxID=1144889 species="Bacteria; Actinobacteria; G
Transaldolase n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4EWN1_MODMB
13_1_40cm_4_scaffold_2332_18
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14131..14913)
DNA (783bp) protein (261aa)
Myo-inositol catabolism IolB region n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AVA1_RUBXD
myo-inositol catabolism IolB region
Myo-inositol catabolism IolB region {ECO:0000313|EMBL:ABG04677.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" so
13_1_40cm_4_scaffold_2332_19
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14910..16769)
DNA (1860bp) protein (620aa)
Thiamine pyrophosphate enzyme, central region n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AVA0_RUBXD
thiamine pyrophosphate enzyme, central region
Thiamine pyrophosphate enzyme, central region {ECO:0000313|EMBL:ABG04678.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubroba
13_1_40cm_4_scaffold_2332_20
Thermus oshimai, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(16798..18231)
DNA (1434bp) protein (478aa)
methylmalonate-semialdehyde dehydrogenase n=1 Tax=Thermus islandicus RepID=UPI0003B46208
methylmalonic acid semialdehyde dehydrogenase
Methylmalonic acid semialdehyde dehydrogenase {ECO:0000313|EMBL:AFV77427.1}; TaxID=751945 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus oshimai
13_1_40cm_4_scaffold_2332_21
Rhodococcus jostii, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18231..19160)
DNA (930bp) protein (310aa)
inosose dehydratase n=1 Tax=Rhodococcus sp. DK17 RepID=UPI00030E1E75
sugar phosphate isomerase/epimerase IolE
Possible IolE protein {ECO:0000313|EMBL:ABG93187.1}; TaxID=101510 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus jostii (strain RHA1).;"
13_1_40cm_4_scaffold_2332_22
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

comp(19157..20116)
DNA (960bp) protein (320aa)
dehydrogenase; K00010 myo-inositol 2-dehydrogenase [EC:1.1.1.18] Tax=GWC2_RIF_CHLX_73_18_curated
Inositol 2-dehydrogenase id=4413318 bin=GWC2_Chloroflexi_73_18 species=unknown genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
oxidoreductase
13_1_40cm_4_scaffold_2332_23
Halobacillus sp. BBL2006, Halobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

20225..21550
DNA (1326bp) protein (442aa)
hypothetical protein n=1 Tax=Salsuginibacillus kocurii RepID=UPI00036968E9
Uncharacterized protein {ECO:0000313|EMBL:KHE72589.1}; TaxID=1543706 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Halobacillus.;" source="Halobacillus sp. BBL2006.;"
ABC transporter substrate-binding protein
13_1_40cm_4_scaffold_2332_24
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21597..22493
DNA (897bp) protein (299aa)
Putative ABC transporter permease protein YurN n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X2M7_RHIFR
yurN3; ABC transporter permease YurN
Putative ABC transporter permease protein YurN {ECO:0000313|EMBL:AFL50133.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer gro
13_1_40cm_4_scaffold_2332_25
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22490..23344
DNA (855bp) protein (285aa)
ABC-type sugar transport system, permease component n=1 Tax=Rhizobium sp. CF122 RepID=J3BHT1_9RHIZ
ABC-type sugar transport system, permease component
ABC-type sugar transport system, permease component {ECO:0000313|EMBL:CDM61623.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacteri
13_1_40cm_4_scaffold_2332_26
Pseudothermotoga thermarum, Pseudothermotoga, Thermotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

23341..24138
DNA (798bp) protein (266aa)
Xylose isomerase domain-containing protein TIM barrel n=1 Tax=Thermotoga thermarum DSM 5069 RepID=F7YTH0_9THEM
xylose isomerase domain-containing protein
Xylose isomerase domain-containing protein TIM barrel {ECO:0000313|EMBL:AEH51184.1}; TaxID=688269 species="Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Pseudothermotoga.;" source="Pseudotherm
13_1_40cm_4_scaffold_2332_27
Paenibacillus durus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24327..24575)
DNA (249bp) protein (83aa)
hypothetical protein n=1 Tax=Methylomonas sp. MK1 RepID=UPI00036B014D
Copper oxidase {ECO:0000313|EMBL:AKG34864.1}; TaxID=1333534 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus durus ATCC 35681.;"
cotA; spore coat protein A
13_1_40cm_4_scaffold_2332_28
Streptomyces himastatinicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24572..26035)
DNA (1464bp) protein (488aa)
Phenoxazinone synthase (EC:1.-.-.-)
hypothetical protein n=1 Tax=Nocardiopsis potens RepID=UPI0003677EF7
Phenoxazinone synthase (PHS) {ECO:0000313|EMBL:EFL23348.1}; TaxID=457427 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces himastatinicus ATC
Displaying 28 items

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