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13_1_40cm_4_scaffold_2374

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2374_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2..448)
DNA (447bp) protein (149aa)
Putative uncharacterized protein id=4947490 bin=GWA2_Methylomirabilis_73_35 species=Rivularia sp. PCC 7116 genus=Rivularia taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_2374_2
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

505..1146
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJU6_AFIFE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKS30602.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
13_1_40cm_4_scaffold_2374_3
Streptomyces sp. NRRL S-495, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1198..2196
DNA (999bp) protein (333aa)
oxidoreductase, molybdopterin binding (EC:1.7.1.3)
Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) RepID=Q0UPC2_PHANO
Uncharacterized protein {ECO:0000313|EMBL:KJY25978.1}; TaxID=1609133 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. NRRL S-495.;"
13_1_40cm_4_scaffold_2374_4
R_Rokubacteria_69_13, Rokubacteria, Bacteria

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2193..3566
DNA (1374bp) protein (458aa)
branched chain amino acid ABC transporter substrate-binding protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
livK; branched-chain/neutral amino acids amide ABC transporter periplasmic substrate-binding protein id=14625571 bin=bin7_NC10_sister species=Haloferax denitrificans genus=Haloferax taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
amino acid/amide ABC transporter substrate-binding protein, HAAT family
13_1_40cm_4_scaffold_2374_5
unknown

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3566..4582
DNA (1017bp) protein (339aa)
Nitrilase {ECO:0000313|EMBL:CPR18283.1}; EC=3.5.5.1 {ECO:0000313|EMBL:CPR18283.1};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.
hypothetical protein n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI00037995C7
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
13_1_40cm_4_scaffold_2374_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4675..4914)
DNA (240bp) protein (80aa)
Uncharacterized protein id=5009804 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_2374_7
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

5076..5351
DNA (276bp) protein (92aa)
Prevent-host-death family protein Tax=GWA2_Rokubacteria_70_23_curated
Prevent-host-death family protein id=4161391 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2374_8
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

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5357..5743
DNA (387bp) protein (129aa)
Ribonuclease VapC n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=D6SJZ4_9DELT
putative plasmid stability protein Y4JK; K07062 Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
PilT protein domain-containing protein
13_1_40cm_4_scaffold_2374_9
Fischerella sp. JSC-11, Fischerella, Stigonematales, Cyanobacteria, Bacteria

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5850..6254
DNA (405bp) protein (135aa)
Heat shock protein Hsp20 n=2 Tax=Fischerella RepID=G6FSZ6_9CYAN
Heat shock protein Hsp20 {ECO:0000313|EMBL:EHC14982.1}; TaxID=741277 species="Bacteria; Cyanobacteria; Stigonematales; Fischerella.;" source="Fischerella sp. JSC-11.;"
heat shock protein Hsp20
13_1_40cm_4_scaffold_2374_10

Not on your lists

6263..8677
DNA (2415bp) protein (805aa)
ATP-dependent protease La (EC:3.4.21.53)
ATP-dependent protease La n=1 Tax=uncultured prokaryote RepID=H5SPL5_9ZZZZ
ATP-dependent protease La {ECO:0000313|EMBL:BAL58101.1}; TaxID=198431 species="unclassified sequences; environmental samples.;" source="uncultured prokaryote.;"
13_1_40cm_4_scaffold_2374_11
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

8928..9323
DNA (396bp) protein (132aa)
chemotaxis protein CheY n=1 Tax=Methylomonas sp. MK1 RepID=UPI000379BA25
cheY; chemotaxis protein CheY; K03413 two-component system, chemotaxis family, response regulator CheY Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
response regulator receiver protein
13_1_40cm_4_scaffold_2374_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9320..9898
DNA (579bp) protein (193aa)
hypothetical protein id=2322392 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_2374_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9895..10275
DNA (381bp) protein (127aa)
Chemotaxis protein CheY id=2322393 bin=GWA2_Methylomirabilis_73_35 species=Gluconobacter oxydans genus=Gluconobacter taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
response regulator receiver protein; K03413 two-component system, chemotaxis family, response regulator CheY Tax=GWA2_Rokubacteria_73_35_curated
cheY; chemotaxis regulator CheY
13_1_40cm_4_scaffold_2374_14
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

10272..11900
DNA (1629bp) protein (543aa)
cheA; chemotaxis protein cheA (EC:2.7.3.-)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidat
Chemotaxis protein histidine kinase CheA id=4764263 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_4_scaffold_2374_15
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

11897..13078
DNA (1182bp) protein (394aa)
putative Extracellular ligand-binding receptor Tax=GWF2_Verrucomicrobia_62_7_curated
Extracellular ligand-binding receptor id=4163444 bin=GWC2_Elusimicrobia_64_44 species=Desulfomicrobium baculatum genus=Desulfomicrobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Elusimicrobia_64_44 organism_group=Elusimicrobia organism_desc=Good
putative Extracellular ligand-binding receptor
13_1_40cm_4_scaffold_2374_16
unknown

Not on your lists

comp(13362..13595)
DNA (234bp) protein (78aa)

This feature has no annotations

13_1_40cm_4_scaffold_2374_17
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14061..14477)
DNA (417bp) protein (139aa)
hypothetical protein, partial n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI000361012B
Uncharacterised protein {ECO:0000313|EMBL:CRD94243.1}; TaxID=520 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
hok; hypothetical protein
13_1_40cm_4_scaffold_2374_18
unknown

Not on your lists

comp(14866..15099)
DNA (234bp) protein (78aa)
hypothetical protein
13_1_40cm_4_scaffold_2374_19
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

15199..16107
DNA (909bp) protein (303aa)
cheR; chemotaxis protein methyltransferase (EC:2.1.1.80) Tax=GWA2_Rokubacteria_70_23_curated
cheR; chemotaxis protein methyltransferase (EC:2.1.1.80)
Chemotaxis protein methyltransferase id=2322395 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2374_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

16104..16685
DNA (582bp) protein (194aa)
Probable chemoreceptor glutamine deamidase CheD id=2322396 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MCP proteins methylation stimulator CheD Tax=GWA2_Rokubacteria_73_35_curated
MCP proteins methylation stimulator CheD
13_1_40cm_4_scaffold_2374_21
unknown

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16682..16894
DNA (213bp) protein (71aa)

This feature has no annotations

13_1_40cm_4_scaffold_2374_22
unknown

Not on your lists

comp(17005..17163)
DNA (159bp) protein (53aa)

This feature has no annotations

13_1_40cm_4_scaffold_2374_23
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

comp(17579..17848)
DNA (270bp) protein (90aa)
Putative uncharacterized protein n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YMT3_9DELT
hypothetical protein; K09803 hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
hypothetical protein
13_1_40cm_4_scaffold_2374_24
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17991..18944
DNA (954bp) protein (318aa)
Uncharacterized protein n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HSR6_ACHXA
hypothetical protein Tax=RBG_16_Betaproteobacteria_64_18_curated
hypothetical protein
13_1_40cm_4_scaffold_2374_25
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19345..19683
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HSR5_ACHXA
Uncharacterized protein {ECO:0000313|EMBL:KJC36399.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp
hypothetical protein
Displaying 25 items

View Taxonomy