ggKbase home page

13_1_40cm_4_scaffold_2501

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2501_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1..123)
DNA (123bp) protein (41aa)
citrate synthase (EC:2.3.3.1); K01647 citrate synthase [EC:2.3.3.1] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Citrate synthase id=3963832 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2501_2
R_Melainabacteria_34_12, Melainabacteria, Bacteria

Not on your lists

294..716
DNA (423bp) protein (141aa)
Uncharacterized protein Tax=RIFCSPHIGHO2_02_FULL_Melainabacteria_34_12_curated
13_1_40cm_4_scaffold_2501_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(705..1997)
DNA (1293bp) protein (431aa)
hypothetical protein; K09927 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3716770 bin=GWA2_Methylomirabilis_73_35 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_2501_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2111..3742
DNA (1632bp) protein (544aa)
Acyl-CoA synthetase/AMP-acid ligase id=3713098 bin=GWF2_Methylomirabilis_70_14 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl-CoA synthetase/AMP-acid ligase Tax=GWA2_Rokubacteria_73_35_curated
acyl-CoA synthetase/AMP-acid ligase
13_1_40cm_4_scaffold_2501_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3744..4730
DNA (987bp) protein (329aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4216379 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_2501_6
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4763..5782
DNA (1020bp) protein (340aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00037C9B61
Uncharacterized protein {ECO:0000313|EMBL:ETW99261.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
luciferase-like monooxygenase
13_1_40cm_4_scaffold_2501_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5838..6134)
DNA (297bp) protein (99aa)
mdlC; benzoylformate decarboxylase (EC:4.1.1.7); K01576 benzoylformate decarboxylase [EC:4.1.1.7] Tax=GWA2_Rokubacteria_73_35_curated
decarboxylase (EC:4.1.1.7)
Thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase id=3713089 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2501_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6232..7197
DNA (966bp) protein (322aa)
Uroporphyrinogen decarboxylase id=4216374 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Uroporphyrinogen III synthase, uroporhyrinogen decarboxylase Tax=GWA2_Rokubacteria_73_35_curated
Uroporphyrinogen III synthase, uroporhyrinogen decarboxylase
13_1_40cm_4_scaffold_2501_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7194..8123
DNA (930bp) protein (310aa)
ferrochelatase (EC:4.99.1.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ferrochelatase (EC:4.99.1.1)
Ferrochelatase id=4998219 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2501_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8125..9573
DNA (1449bp) protein (483aa)
protoporphyrinogen oxidase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Protoporphyrinogen oxidase id=4998220 bin=GWA2_Methylomirabilis_73_35 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
protoporphyrinogen IX and coproporphyrinogen III oxidase
13_1_40cm_4_scaffold_2501_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9541..10296)
DNA (756bp) protein (252aa)
CoA-transferase III family protein id=4998221 bin=GWA2_Methylomirabilis_73_35 species=Kosakonia radicincitans genus=Kosakonia taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
formyl-CoA transferase Tax=GWA2_Rokubacteria_73_35_curated
L-carnitine dehydratase/bile acid-inducible protein F
13_1_40cm_4_scaffold_2501_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10332..10697)
DNA (366bp) protein (122aa)
formyl-CoA transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
CoA-transferase III family protein id=4998221 bin=GWA2_Methylomirabilis_73_35 species=Kosakonia radicincitans genus=Kosakonia taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
CoA transferase
13_1_40cm_4_scaffold_2501_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10805..11011
DNA (207bp) protein (69aa)
Putative uncharacterized protein id=4998222 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_2501_14
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

11130..12326
DNA (1197bp) protein (399aa)
amino acid transporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Amino acid/polyamine/organocation transporter, APC superfamily id=4998223 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amino acid transporter
13_1_40cm_4_scaffold_2501_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

12323..13300
DNA (978bp) protein (326aa)
magnesium and cobalt transport protein CorA; K03284 magnesium transporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Magnesium and cobalt transport protein CorA id=4226584 bin=GWF2_Methylomirabilis_70_14 species=Niastella koreensis genus=Niastella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
magnesium and cobalt transport protein CorA
13_1_40cm_4_scaffold_2501_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13307..13660)
DNA (354bp) protein (118aa)
hypothetical protein id=4998224 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_2501_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13657..14472)
DNA (816bp) protein (272aa)
Putative uncharacterized protein id=4998225 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_2501_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

14631..15257
DNA (627bp) protein (209aa)
hypothetical protein; K07323 putative toluene tolerance protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Organic solvent tolerance ABC transporter, periplasmic substrate-binding protein id=4998226 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_2501_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15624..16757
DNA (1134bp) protein (378aa)
sodium solute transporter superfamily protein Tax=GWA2_Rokubacteria_73_35_curated
SSS sodium solute transporter superfamily id=4998227 bin=GWA2_Methylomirabilis_73_35 species=Coraliomargarita akajimensis genus=Coraliomargarita taxon_order=Puniceicoccales taxon_class=Opitutae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sodium solute transporter superfamily protein
13_1_40cm_4_scaffold_2501_20
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16754..17647)
DNA (894bp) protein (298aa)
Methyltransferase type 12 n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZ59_RUBXD
type 12 methyltransferase
Methyltransferase type 12 {ECO:0000313|EMBL:ABG03319.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubr
13_1_40cm_4_scaffold_2501_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17644..19125)
DNA (1482bp) protein (494aa)
beta-N-acetylglucosaminidase; K01207 beta-N-acetylhexosaminidase [EC:3.2.1.52] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative beta-N-acetylglucosaminidase id=4485808 bin=GWC2_Methylomirabilis_70_24 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
beta-glucosidase
13_1_40cm_4_scaffold_2501_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

19363..19842
DNA (480bp) protein (160aa)
uncharacterized LOC101093251 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
UPI0001586237 related cluster id=3431001 bin=GWA2_Methylomirabilis_73_35 species=Botryotinia fuckeliana genus=Botryotinia taxon_order=Helotiales taxon_class=Leotiomycetes phylum=Ascomycota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2501_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

19842..20354
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI0003764836
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
13_1_40cm_4_scaffold_2501_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20407..21600)
DNA (1194bp) protein (398aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterised conserved protein UCP016719 id=4485812 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_40cm_4_scaffold_2501_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

21607..22530
DNA (924bp) protein (308aa)
murQ; N-acetylmuramic acid 6-phosphate etherase; K07106 N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126] Tax=GWA2_Rokubacteria_73_35_curated
N-acetylmuramic acid 6-phosphate etherase id=3431007 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
murQ; N-acetylmuramic acid 6-phosphate etherase
13_1_40cm_4_scaffold_2501_26
unknown

Not on your lists

comp(22509..22649)
DNA (141bp) protein (47aa)

This feature has no annotations

13_1_40cm_4_scaffold_2501_27
unknown

Not on your lists

comp(23820..24182)
DNA (363bp) protein (121aa)

This feature has no annotations

13_1_40cm_4_scaffold_2501_28
unknown

Not on your lists

24836..25063
DNA (228bp) protein (76aa)

This feature has no annotations

13_1_40cm_4_scaffold_2501_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(25710..25934)
DNA (225bp) protein (75aa)
dihydroxyacid dehydratase (EC:4.2.1.9); K01687 dihydroxy-acid dehydratase [EC:4.2.1.9] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dihydroxy-acid dehydratase (EC:4.2.1.9)
Putative dihydroxy-acid dehydratase protein n=1 Tax=Marinomonas sp. MED121 RepID=A3YCX5_9GAMM
13_1_40cm_4_scaffold_2501_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

25977..26288
DNA (312bp) protein (104aa)
short-chain dehydrogenase/reductase SDR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
short chain dehydrogenase family protein id=14625655 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
short-chain dehydrogenase/reductase SDR
Displaying 30 items

View Taxonomy