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13_1_40cm_4_scaffold_253

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_253_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(1..1686)
DNA (1686bp) protein (562aa)
2-oxoacid ferredoxin oxidoreductase; K04090 indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Indolepyruvate ferredoxin oxidoreductase id=3826984 bin=GWF2_Methylomirabilis_70_14 species=Streptosporangium roseum genus=Streptosporangium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
2-oxoacid ferredoxin oxidoreductase
13_1_40cm_4_scaffold_253_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1683..2540)
DNA (858bp) protein (286aa)
2-oxoacid ferredoxin oxidoreductase; K04090 indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
2-oxoacid ferredoxin oxidoreductase (EC:1.2.7.8)
Indolepyruvate ferredoxin oxidoreductase id=3986305 bin=GWA2_Methylomirabilis_73_35 species=Streptosporangium roseum genus=Streptosporangium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_253_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2625..3572
DNA (948bp) protein (316aa)
luciferase-like monooxygenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative oxidoreductase id=4290028 bin=GWC2_Methylomirabilis_70_16 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative oxidoreductase
13_1_40cm_4_scaffold_253_4
unknown

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comp(3875..4051)
DNA (177bp) protein (59aa)

This feature has no annotations

13_1_40cm_4_scaffold_253_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4128..4676)
DNA (549bp) protein (183aa)
nuclease; K01174 micrococcal nuclease [EC:3.1.31.1] Tax=GWA2_Rokubacteria_73_35_curated
Thermonuclease id=3986306 bin=GWA2_Methylomirabilis_73_35 species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nuclease
13_1_40cm_4_scaffold_253_6
Paenibacillus mucilaginosus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

4733..5470
DNA (738bp) protein (246aa)
Polysaccharide deacetylase family protein n=1 Tax=Paenibacillus mucilaginosus (strain KNP414) RepID=F8FA11_PAEMK
polysaccharide deacetylase
Polysaccharide deacetylase family protein {ECO:0000313|EMBL:AEI45209.1}; TaxID=1036673 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus muci
13_1_40cm_4_scaffold_253_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5480..5983)
DNA (504bp) protein (168aa)
hypothetical protein; K06962 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3986310 bin=GWA2_Methylomirabilis_73_35 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_253_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6011..7057)
DNA (1047bp) protein (349aa)
5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase; K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC:2.1.1.14)
Methionine synthase II (Cobalamin-independent) id=2413349 bin=GWA2_Methylomirabilis_73_35 species=Burkholderiales bacterium JOSHI_001 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_253_9
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

comp(7064..8674)
DNA (1611bp) protein (537aa)
Putative glutamine cyclotransferase n=1 Tax=uncultured Acidobacteria bacterium RepID=Q7X2U3_9BACT
Putative glutamine cyclotransferase {ECO:0000313|EMBL:AAP58621.1}; TaxID=171953 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
glutamine cyclotransferase
13_1_40cm_4_scaffold_253_10
unknown

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comp(8924..10339)
DNA (1416bp) protein (472aa)

This feature has no annotations

13_1_40cm_4_scaffold_253_11
unknown

Not on your lists

comp(10353..10829)
DNA (477bp) protein (159aa)

This feature has no annotations

13_1_40cm_4_scaffold_253_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10826..11536)
DNA (711bp) protein (237aa)
VCBS repeat-containing protein,YVTN family beta-propeller repeat protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_4_scaffold_253_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11578..11829)
DNA (252bp) protein (84aa)
Putative cell surface protein n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YX27_METPS
VCBS repeat-containing protein,YVTN family beta-propeller repeat protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative cell surface protein
13_1_40cm_4_scaffold_253_14
unknown

Not on your lists

11847..12509
DNA (663bp) protein (221aa)

This feature has no annotations

13_1_40cm_4_scaffold_253_15
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(12443..13402)
DNA (960bp) protein (320aa)
Putative uncharacterized protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LKP1_CHLTF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEP13648.1}; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (stra
13_1_40cm_4_scaffold_253_16
RLO_RIF03_38_15, RIF3, Bacteria

Not on your lists

comp(13487..14644)
DNA (1158bp) protein (386aa)
Putative Fe-S oxidoreductase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LKP2_CHLTF
putative Fe-S oxidoreductase Tax=RIFCSPLOWO2_12_FULL_RIF03_38_15_curated
putative Fe-S oxidoreductase
13_1_40cm_4_scaffold_253_17
RLO_RIF03_38_15, RIF3, Bacteria

Not on your lists

comp(14641..14946)
DNA (306bp) protein (102aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF03_38_15_curated
Putative uncharacterized protein id=4321924 bin=GWA2_Bacteroidetes_A19_40_15 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Bacteroidetes_A19_40_15 organism_group=Bacteroidetes
hypothetical protein
13_1_40cm_4_scaffold_253_18
Nostoc sp. PCC 7120, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

15192..15593
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Oscillatoria sp. PCC 10802 RepID=UPI00034A9E5E
two-component hybrid sensor and regulator
Two-component hybrid sensor and regulator {ECO:0000313|EMBL:BAB75684.1}; TaxID=103690 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc sp. (strain PCC 7120 / UTEX 25
13_1_40cm_4_scaffold_253_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15604..16446)
DNA (843bp) protein (281aa)
mannose-sensitive agglutinin (MSHA) biogenesis protein MshQ; K12287 MSHA biogenesis protein MshQ Tax=GWA2_Rokubacteria_73_35_curated
Putative mannose-sensitive agglutinin (MSHA) biogenesis protein MshQ (Pilus type IV) id=4278837 bin=GWA2_Methylomirabilis_73_35 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_253_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16498..18126
DNA (1629bp) protein (543aa)
gamma-glutamyltransferase 2 (EC:2.3.2.2) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
gamma-glutamyltranspeptidase (EC:2.3.2.2)
Gamma-glutamyltransferase id=2558577 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_253_21
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

18131..18919
DNA (789bp) protein (263aa)
ubiquinone/menaquinone biosynthesis methyltransferase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein id=5095939 bin=PER_GWF2_38_29 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=PER_GWF2_38_29 organism_group=PER (Peregrinibacteria)
methyltransferase type 11
13_1_40cm_4_scaffold_253_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18916..20127)
DNA (1212bp) protein (404aa)
Uncharacterized protein id=2558561 bin=GWA2_Methylomirabilis_73_35 species=Hydrocarboniphaga effusa genus=Hydrocarboniphaga taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_4_scaffold_253_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20190..21041
DNA (852bp) protein (284aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=2558357 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Janthinobacterium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_253_24
[Oscillatoria] sp. PCC 6506, Kamptonema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

21096..21662
DNA (567bp) protein (189aa)
Streptomyces cyclase/dehydrase n=1 Tax=Oscillatoria sp. PCC 6506 RepID=D8G603_9CYAN
Streptomyces cyclase/dehydrase {ECO:0000313|EMBL:CBN58043.1}; TaxID=272129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Kamptonema.;" source="[Oscillatoria] sp. PCC 6506.;
cyclase
13_1_40cm_4_scaffold_253_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

21739..24309
DNA (2571bp) protein (857aa)
putative peptidase M1, membrane alanine aminopeptidase (EC:3.4.11.2) Tax=GWA2_Rokubacteria_73_35_curated
putative peptidase M1, membrane alanine aminopeptidase (EC:3.4.11.2)
Putative Peptidase M1, membrane alanine aminopeptidase id=2558355 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_253_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24319..24708)
DNA (390bp) protein (130aa)
Fimbrial protein pilin Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Fimbrial protein pilin id=3526412 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Fimbrial protein pilin
13_1_40cm_4_scaffold_253_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24956..26431)
DNA (1476bp) protein (492aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14626881 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_253_28
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(26428..27114)
DNA (687bp) protein (229aa)
pilW; protein PilW; K02672 type IV pilus assembly protein PilW Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Type II secretory pathway component PulJ-like id=4953738 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_253_29
unknown

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comp(27111..27224)
DNA (114bp) protein (38aa)

This feature has no annotations

Displaying 29 items

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