ggKbase home page

13_1_40cm_4_scaffold_2710

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2710_1
unknown

Not on your lists

3..110
DNA (108bp) protein (36aa)

This feature has no annotations

13_1_40cm_4_scaffold_2710_2
R_Elusimicrobia_59_12, Elusimicrobia, Bacteria

Not on your lists

comp(228..608)
DNA (381bp) protein (127aa)
Response regulator receiver domain-containing protein n=1 Tax=Citreicella sp. 357 RepID=I1AVI6_9RHOB
two-component response regulator Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_59_12_curated
response regulator receiver protein
13_1_40cm_4_scaffold_2710_3
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(739..1419)
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Amycolatopsis orientalis HCCB10007 RepID=R4SSA5_AMYOR
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
hypothetical protein
13_1_40cm_4_scaffold_2710_4
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(1416..2018)
DNA (603bp) protein (201aa)
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
RNA polymerase sigma-70 factor, ECF subfamily id=2777671 bin=GWC2_Chloroflexi_73_18 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
ECF subfamily RNA polymerase sigma-24 subunit
13_1_40cm_4_scaffold_2710_5
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(2015..2359)
DNA (345bp) protein (115aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Putative uncharacterized protein id=3202763 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_2710_6
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

2379..2792
DNA (414bp) protein (138aa)
heme exporter protein A (EC:3.6.3.41) Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
ABC transporter related protein n=1 Tax=Vulcanisaeta distributa (strain DSM 14429 / JCM 11212 / NBRC 100878 / IC-017) RepID=E1QTG0_VULDI
ABC transporter-like protein
13_1_40cm_4_scaffold_2710_7
unknown

Not on your lists

2758..2949
DNA (192bp) protein (64aa)
hypothetical protein; K09687 antibiotic transport system ATP-binding protein
13_1_40cm_4_scaffold_2710_8
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

2946..3608
DNA (663bp) protein (221aa)
heme exporter protein B n=1 Tax=Thermus igniterrae RepID=UPI000381062E
Cytochrome c-type biogenesis protein, heme exporter protein B; K02194 heme exporter protein B Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
cytochrome c-type biogenesis protein CcmB
13_1_40cm_4_scaffold_2710_9
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3615..5096)
DNA (1482bp) protein (494aa)
Putative lipoprotein n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SI29_NOCSJ
Cytochrome c peroxidase {ECO:0000313|EMBL:AKF04521.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandara
putative lipoprotein
13_1_40cm_4_scaffold_2710_10
Stackebrandtia nassauensis, Stackebrandtia, Glycomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5187..5897)
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI00036CA985
putative transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:ADD42506.1}; TaxID=446470 species="Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia.;" source="Stackebrandtia nassauensis
13_1_40cm_4_scaffold_2710_11
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

6004..6732
DNA (729bp) protein (243aa)
Cytochrome c assembly protein n=1 Tax=Streptomyces zinciresistens K42 RepID=G2GM59_9ACTO
cytochrome c assembly protein; K02195 heme exporter protein C Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
cytochrome c assembly protein
13_1_40cm_4_scaffold_2710_12
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

6838..7248
DNA (411bp) protein (137aa)
Cytochrome c-type biogenesis protein CcmE n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=CCME_DECAR
cytochrome c-type biogenesis protein CcmE Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
CcmE/CycJ protein
13_1_40cm_4_scaffold_2710_13
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

7245..9242
DNA (1998bp) protein (666aa)
Cytochrome c-type biogenesis protein cycK n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFW7_9BACT
cycK; cytochrome c-type biogenesis protein cycK Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
cycK; cytochrome c-type biogenesis protein cycK
13_1_40cm_4_scaffold_2710_14
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

9242..9781
DNA (540bp) protein (180aa)
Thiol:disulfide interchange protein DsbE n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UHR9_MYXSD
thiol:disulfide interchange protein DsbE Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
thiol:disulfide interchange protein DsbE
13_1_40cm_4_scaffold_2710_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9778..10239
DNA (462bp) protein (154aa)
Uncharacterized protein id=4136384 bin=GWA2_Methylomirabilis_73_35 species=Blastococcus saxobsidens genus=Blastococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein; K02200 cytochrome c-type biogenesis protein CcmH Tax=GWA2_Rokubacteria_73_35_curated
CcmH family cytochrome c biogenesis protein
13_1_40cm_4_scaffold_2710_16
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10236..11036
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SI36_NOCSJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABL81471.1}; Flags: Precursor;; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp.
13_1_40cm_4_scaffold_2710_trna_1
unknown

Not on your lists

11080..11150
DNA (71bp)
transferRNA
13_1_40cm_4_scaffold_2710_17
RBG_16_Chloroflexi_50_9_curated, Chloroflexi, Bacteria

Not on your lists

comp(11180..11620)
DNA (441bp) protein (147aa)
hypothetical protein Tax=RBG_16_Chloroflexi_50_9_curated
conserved repeat domain protein id=1242873 bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
13_1_40cm_4_scaffold_2710_18
unknown

Not on your lists

comp(11794..12264)
DNA (471bp) protein (157aa)

This feature has no annotations

13_1_40cm_4_scaffold_2710_19
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12264..13199)
DNA (936bp) protein (312aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:00002
ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6Q080_9FIRM
13_1_40cm_4_scaffold_2710_20
R_OP11_Levybacteria_42_15, Levybacteria, Microgenomates, Bacteria

Not on your lists

comp(13199..14167)
DNA (969bp) protein (323aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OP11_Levybacteria_42_15_curated
Uncharacterized protein id=4749387 bin=GWA2_Planctomycetia_40_7 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycetia_40_7 organism_group=Planctomycetes
hypothetical protein
13_1_40cm_4_scaffold_2710_21
GWB1_OP11_39_12, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(14246..14536)
DNA (291bp) protein (97aa)
adenylate cyclase (EC:4.6.1.1) id=14631937 bin=bin9_gal15 species=Modestobacter marinus genus=Modestobacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin9_gal15 organism_group=GAL15
Uncharacterized protein {ECO:0000313|EMBL:KKQ99029.1}; TaxID=1618574 species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWB1_39_12.;"
hypothetical protein
13_1_40cm_4_scaffold_2710_22
unknown

Not on your lists

14731..15183
DNA (453bp) protein (151aa)

This feature has no annotations

13_1_40cm_4_scaffold_2710_23
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(15236..15427)
DNA (192bp) protein (64aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_40cm_4_scaffold_2710_24
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

16015..16632
DNA (618bp) protein (206aa)
Uncharacterized protein id=4428884 bin=GWC2_Chloroflexi_73_18 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
hypothetical protein; K07220 hypothetical protein Tax=GWC2_RIF_CHLX_73_18_curated
hypothetical protein
13_1_40cm_4_scaffold_2710_25
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

16633..16941
DNA (309bp) protein (103aa)
Phosphate transporter n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CDP5_THET1
phosphate transporter; K03306 inorganic phosphate transporter, PiT family Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
phosphate transporter
Displaying 26 items

View Taxonomy