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13_1_40cm_4_scaffold_2779

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2779_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(3..770)
DNA (768bp) protein (256aa)
Inner-membrane translocator n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIJ7_9BURK
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_70_23_curated
inner-membrane translocator
13_1_40cm_4_scaffold_2779_2
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1005..2219)
DNA (1215bp) protein (405aa)
ABC transporter substrate-binding protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIJ8_9BURK
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein Tax=RBG_16_Betaproteobacteria_66_20_curated
ABC transporter substrate-binding protein
13_1_40cm_4_scaffold_2779_3
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2268..2972)
DNA (705bp) protein (235aa)
ABC transporter, ATP-binding protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RP73_9PROT
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RBG_16_Betaproteobacteria_66_20_curated
ABC transporter-like protein
13_1_40cm_4_scaffold_2779_4
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2965..3720)
DNA (756bp) protein (252aa)
Putative branched-chain amino acid transport system ATP-binding protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8ALP0_AZOBR
ABC transporter-like protein; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RBG_16_Betaproteobacteria_66_20_curated
amino acid ABC transporter ATP-binding protein
13_1_40cm_4_scaffold_2779_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3722..4519)
DNA (798bp) protein (266aa)
3-hydroxyacyl-CoA dehydrogenase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
3-hydroxyacyl-CoA dehydrogenase NAD-binding id=3880345 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
3-hydroxyacyl-CoA dehydrogenase
13_1_40cm_4_scaffold_2779_6
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4637..5608
DNA (972bp) protein (324aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component n=1 Tax=Rhizobium sp. CF080 RepID=J2QDZ7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUC01221.1}; Flags: Precursor;; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group
NMT1/THI5 like domain protein
13_1_40cm_4_scaffold_2779_7
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

5705..7036
DNA (1332bp) protein (444aa)
id=14627806 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
13_1_40cm_4_scaffold_2779_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

7140..8684
DNA (1545bp) protein (515aa)
Oligopeptide ABC transpoter oligopeptide-binding protein id=4192679 bin=GWF2_Methylomirabilis_70_14 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide ABC transporter substrate-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=GWA2_Rokubacteria_70_23_curated
oligopeptide ABC transporter substrate-binding protein
13_1_40cm_4_scaffold_2779_9
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

8729..9655
DNA (927bp) protein (309aa)
binding-protein-dependent transport systems inner membrane component; K02033 peptide/nickel transport system permease protein Tax=GWC2_Rokubacteria_70_16_curated
Binding-protein-dependent transport systems inner membrane component id=4192678 bin=GWF2_Methylomirabilis_70_14 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport systems inner membrane component
13_1_40cm_4_scaffold_2779_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

9621..10529
DNA (909bp) protein (303aa)
Oligopeptide ABC transporter permease protein id=4192677 bin=GWF2_Methylomirabilis_70_14 species=Ketogulonicigenium vulgare genus=Ketogulonicigenium taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gsiD; Oligopeptide ABC transporter permease protein; K02034 peptide/nickel transport system permease protein Tax=GWA2_Rokubacteria_70_23_curated
gsiD; Oligopeptide ABC transporter permease protein
13_1_40cm_4_scaffold_2779_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(10682..10888)
DNA (207bp) protein (69aa)
id=4852965 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
id=4852965 Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_4_scaffold_2779_12
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11040..11777)
DNA (738bp) protein (246aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11K66_MESSB
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABG62209.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae
13_1_40cm_4_scaffold_2779_13
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

comp(11854..12600)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DQC1_BRAJP
binding-protein-dependent transport system inner membrane protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
hypothetical protein
13_1_40cm_4_scaffold_2779_14
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12597..13379)
DNA (783bp) protein (261aa)
ABC transporter, ATP-binding protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZVJ5_9PROT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EHM02958.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacterac
ABC transporter ATP-binding protein
13_1_40cm_4_scaffold_2779_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13376..14521)
DNA (1146bp) protein (382aa)
ivd; isovaleryl-CoA dehydrogenase (EC:1.3.99.10) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ivd; isovaleryl-CoA dehydrogenase (EC:1.3.99.10)
Isovaleryl-CoA dehydrogenase id=2475803 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_2779_16
R_RIF_OD1_13_60_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(14526..14684)
DNA (159bp) protein (53aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_13_60_25_curated
13_1_40cm_4_scaffold_2779_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14714..15118)
DNA (405bp) protein (135aa)
cobalamin B12-binding domain-containing protein; K01849 methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
B12-binding protein; K01849 methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] id=14626086 bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
isobutyryl-CoA mutase
13_1_40cm_4_scaffold_2779_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15118..15540)
DNA (423bp) protein (141aa)
HIT family hydrolase, diadenosine tetraphosphate hydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Histidine triad (HIT) protein id=4743717 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
HIT family hydrolase, diadenosine tetraphosphate hydrolase
13_1_40cm_4_scaffold_2779_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15549..16616)
DNA (1068bp) protein (356aa)
branched-chain amino acid aminotransferase (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain-amino-acid transaminase id=4743718 bin=GWC2_Methylomirabilis_70_24 species=Acetobacteraceae bacterium AT-5844 genus=unknown taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_4_scaffold_2779_20
RBG_13_RIF08_66_14_curated, RIF8, Bacteria

Not on your lists

17273..17719
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Streptomyces sp. BoleA5 RepID=UPI000380FD85
hypothetical protein Tax=RBG_13_RIF08_66_14_curated
13_1_40cm_4_scaffold_2779_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18078..18326)
DNA (249bp) protein (83aa)
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2); K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
methylmalonyl-CoA mutase (EC:5.4.99.2)
Methylmalonyl-CoA mutase, large subunit id=3618738 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2779_22
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(18313..19470)
DNA (1158bp) protein (386aa)
acyl-CoA dehydrogenase domain-containing protein; K00248 butyryl-CoA dehydrogenase [EC:1.3.8.1] Tax=CSP1_6_Rokubacteria
Acyl-CoA dehydrogenase domain protein id=3618735 bin=GWF2_Methylomirabilis_70_14 species=Clostridium ultunense genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl-CoA dehydrogenase
13_1_40cm_4_scaffold_2779_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19470..20450)
DNA (981bp) protein (327aa)
etfA2; electron transfer flavoprotein subunit alpha; K03522 electron transfer flavoprotein alpha subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Electron transfer flavoprotein, alpha subunit id=3618731 bin=GWF2_Methylomirabilis_70_14 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
electron transfer flavoprotein subunit alpha/beta
13_1_40cm_4_scaffold_2779_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20469..21248)
DNA (780bp) protein (260aa)
fixA; electron transfer flavoprotein subunit beta; K03521 electron transfer flavoprotein beta subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Electron transfer flavoprotein, beta subunit id=2475787 bin=GWC2_Methylomirabilis_70_16 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
etfB; electron transfer flavoprotein subunit beta
13_1_40cm_4_scaffold_2779_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21245..22003)
DNA (759bp) protein (253aa)
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator id=14626080 bin=bin7_NC10_sister species=Frankia sp. CN3 genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
GntR family transcriptional regulator
13_1_40cm_4_scaffold_2779_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22153..23238)
DNA (1086bp) protein (362aa)
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18) id=14626074 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18)
13_1_40cm_4_scaffold_2779_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(23420..23590)
DNA (171bp) protein (57aa)
Hemin uptake protein hemP Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Hemin uptake protein hemP id=3544265 bin=GWA2_Methylomirabilis_73_35 species=Methylobacter tundripaludum genus=Methylobacter taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2779_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(23713..24423)
DNA (711bp) protein (237aa)
ABC transporter ATP-binding protein id=1703882 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
braG; branched-chain amino acid ABC transporter ATP-binding protein
13_1_40cm_4_scaffold_2779_29
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(24401..24934)
DNA (534bp) protein (178aa)
putative branched-chain amino acid ABC transporter, ATP-binding component (livG-like); K01995 branched-chain amino acid transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter related id=1703883 bin=GWA2_Methylomirabilis_73_35 species=Azospirillum brasilense genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
braF1; high-affinity branched-chain amino acid transport ATP-binding protein BraF
13_1_40cm_4_scaffold_2779_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(25066..26016)
DNA (951bp) protein (317aa)
Branched-chain amino acid transport system permease protein LivM id=1703884 bin=GWA2_Methylomirabilis_73_35 species=Rhodovulum sp. PH10 genus=Rhodovulum taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter permease; K01998 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter permease
Displaying items 1-30 of 32 in total

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