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13_1_40cm_4_scaffold_2823

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2823_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(2..2452)
DNA (2451bp) protein (817aa)
two-component hybrid sensor and regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Histidine kinase,HAMP domain-containing protein,histidine kinase,cache domain-containing protein,GAF domain-containing protein id=3112752 bin=GWC2_Methylomirabilis_70_16 species=Bradyrhizobium sp. WSM1253 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
two-component hybrid sensor and regulator
13_1_40cm_4_scaffold_2823_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(2532..2966)
DNA (435bp) protein (145aa)
protein tyrosine phosphatase; K01104 protein-tyrosine phosphatase [EC:3.1.3.48] Tax=GWA2_Rokubacteria_70_23_curated
Protein tyrosine phosphatase id=4887997 bin=GWC2_Methylomirabilis_70_24 species=Desulfotomaculum reducens genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
low molecular weight protein-tyrosine-phosphatase
13_1_40cm_4_scaffold_2823_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(3011..4003)
DNA (993bp) protein (331aa)
Short-chain dehydrogenase/reductase SDR id=3951922 bin=GWF2_Methylomirabilis_70_14 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short-chain dehydrogenase/reductase SDR Tax=GWA2_Rokubacteria_70_23_curated
short-chain dehydrogenase/reductase SDR
13_1_40cm_4_scaffold_2823_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4006..4599)
DNA (594bp) protein (198aa)
redoxin domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Redoxin domain protein id=3951920 bin=GWF2_Methylomirabilis_70_14 species=Catenulispora acidiphila genus=Catenulispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
redoxin domain-containing protein
13_1_40cm_4_scaffold_2823_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4633..4917)
DNA (285bp) protein (95aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Peroxiredoxin id=4388219 bin=GWA2_Methylomirabilis_73_35 species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_2823_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5158..5670)
DNA (513bp) protein (171aa)
MutT/nudix family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
MutT/nudix family protein id=4388224 bin=GWA2_Methylomirabilis_73_35 species=Frankia alni genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NUDIX hydrolase
13_1_40cm_4_scaffold_2823_7
unknown

Not on your lists

6042..6290
DNA (249bp) protein (83aa)

This feature has no annotations

13_1_40cm_4_scaffold_2823_8
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(6176..6967)
DNA (792bp) protein (264aa)
2-dehydro-3-deoxyglucarate aldolase (EC:4.1.2.-); K02510 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [EC:4.1.2.-] Tax=GWC2_Rokubacteria_70_16_curated
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC:4.1.2.-)
Oxidoreductase family protein id=4638236 bin=GWC2_Methylomirabilis_70_16 species=endosymbiont of Riftia pachyptila genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_2823_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7005..7919)
DNA (915bp) protein (305aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=3784125 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_2823_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7975..8271
DNA (297bp) protein (99aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=4388230 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_2823_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8273..9295
DNA (1023bp) protein (341aa)
Farnesyl-diphosphate farnesyltransferase (EC:2.5.1.21) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Farnesyl-diphosphate farnesyltransferase (EC:2.5.1.21)
Farnesyl-diphosphate farnesyltransferase id=3659323 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_2823_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9616..10488)
DNA (873bp) protein (291aa)
Peptidase, M23/M37 family id=4388234 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_2823_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10485..11369)
DNA (885bp) protein (295aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4388235 bin=GWA2_Methylomirabilis_73_35 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_2823_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11486..11743
DNA (258bp) protein (86aa)
id=3659327 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
id=4123400 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_4_scaffold_2823_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11885..12592
DNA (708bp) protein (236aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein id=4388236 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2823_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13139..13999)
DNA (861bp) protein (287aa)
Putative ATPase, Mrp homolog id=4388291 bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mrp; putative ATPase; K03593 ATP-binding protein involved in chromosome partitioning Tax=GWA2_Rokubacteria_73_35_curated
ATP-binding protein
13_1_40cm_4_scaffold_2823_17
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(13996..14421)
DNA (426bp) protein (142aa)
id=14626560 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
id=14626560 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_2823_18
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(14421..14627)
DNA (207bp) protein (69aa)
radical SAM protein id=14626559 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
radical SAM protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
light-independent protochlorophyllide reductase, B subunit
13_1_40cm_4_scaffold_2823_19
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

15269..15613
DNA (345bp) protein (115aa)
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
13_1_40cm_4_scaffold_2823_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15549..15812)
DNA (264bp) protein (88aa)
putative heme d1 biosynthesis radical SAM protein NirJ2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
radical SAM protein id=14626559 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
radical SAM protein
13_1_40cm_4_scaffold_2823_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16038..17945)
DNA (1908bp) protein (636aa)
putative universal stress protein UspA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative universal stress protein UspA id=14626558 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
putative universal stress protein UspA
13_1_40cm_4_scaffold_2823_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17966..18739)
DNA (774bp) protein (258aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative lipoprotein id=4083660 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative lipoprotein
13_1_40cm_4_scaffold_2823_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18736..19104)
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00037F3656
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_4_scaffold_2823_24
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(19136..19465)
DNA (330bp) protein (110aa)
Caa(3)-type oxidase, subunit IV Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Caa(3)-type oxidase, subunit IV id=4083662 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_2823_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(19478..20095)
DNA (618bp) protein (206aa)
cytochrome c oxidase subunit III; K02276 cytochrome c oxidase subunit III [EC:1.9.3.1] Tax=GWA2_Rokubacteria_73_35_curated
Cytochrome c oxidase subunit III id=1881833 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
cytochrome c oxidase subunit III
13_1_40cm_4_scaffold_2823_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(20092..20358)
DNA (267bp) protein (89aa)
hypothetical protein id=4083667 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_2823_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(20355..21023)
DNA (669bp) protein (223aa)
Cytochrome c oxidase subunit III subfamily id=4083670 bin=GWA2_Methylomirabilis_73_35 species=Verrucomicrobiae bacterium DG1235 genus=unknown taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
heme/copper-type cytochrome/quinol oxidase, subunit 3 Tax=GWA2_Rokubacteria_73_35_curated
cytochrome c oxidase subunit III
13_1_40cm_4_scaffold_2823_28
unknown

Not on your lists

comp(21023..21121)
DNA (99bp) protein (33aa)

This feature has no annotations

13_1_40cm_4_scaffold_2823_29
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(21118..22044)
DNA (927bp) protein (309aa)
ctaB; protoheme IX farnesyltransferase (Heme O synthase) (Heme B farnesyltransferase) (EC:2.5.1.-) Tax=GWA2_Rokubacteria_73_35_curated
ctaB; protoheme IX farnesyltransferase (Heme O synthase) (Heme B farnesyltransferase) (EC:2.5.1.-)
Protoheme IX farnesyltransferase id=4083674 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2823_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(22041..23096)
DNA (1056bp) protein (352aa)
Cytochrome oxidase assembly Tax=GWA2_Rokubacteria_73_35_curated
Putative Cytochrome oxidase assembly id=4083676 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Cytochrome oxidase assembly
Displaying items 1-30 of 31 in total

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