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13_1_40cm_4_scaffold_2748

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2748_1
unknown

Not on your lists

comp(56..226)
DNA (171bp) protein (57aa)

This feature has no annotations

13_1_40cm_4_scaffold_2748_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(210..1706)
DNA (1497bp) protein (499aa)
Putative uncharacterized protein id=4472641 bin=GWA2_Methylomirabilis_73_35 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_2748_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1691..2296)
DNA (606bp) protein (202aa)
recombinase A Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
RecA domain protein id=4472640 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
recombinase A
13_1_40cm_4_scaffold_2748_4
Anaeromyxobacter sp. K, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2453..3532
DNA (1080bp) protein (360aa)
Oxidoreductase domain protein n=1 Tax=Anaeromyxobacter sp. (strain K) RepID=B4UEV6_ANASK
oxidoreductase domain-containing protein
Oxidoreductase domain protein {ECO:0000313|EMBL:ACG75073.1}; Flags: Precursor;; TaxID=447217 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacterace
13_1_40cm_4_scaffold_2748_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3574..4365
DNA (792bp) protein (264aa)
Putative uncharacterized protein n=1 Tax=Grosmannia clavigera (strain kw1407 / UAMH 11150) RepID=F0XHS8_GROCL
peptidoglycan-binding domain 1 protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
cell wall surface anchor family protein
13_1_40cm_4_scaffold_2748_6
unknown

Not on your lists

comp(4501..5781)
DNA (1281bp) protein (427aa)

This feature has no annotations

13_1_40cm_4_scaffold_2748_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5778..6764)
DNA (987bp) protein (329aa)
peptidase, M50 family protein (EC:3.4.24.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptidase M50 id=2319281 bin=GWA2_Methylomirabilis_73_35 species=Desulfonatronospira thiodismutans genus=Desulfonatronospira taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_2748_8
unknown

Not on your lists

comp(6761..7174)
DNA (414bp) protein (138aa)

This feature has no annotations

13_1_40cm_4_scaffold_2748_9
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7290..8546
DNA (1257bp) protein (419aa)
Cardiolipin synthetase {ECO:0000313|EMBL:CDS54800.1}; EC=2.7.8.- {ECO:0000313|EMBL:CDS54800.1};; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; P
Putative cardiolipin synthetase n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q13L71_BURXL
cls; cardiolipin synthase
13_1_40cm_4_scaffold_2748_10
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(8780..9037)
DNA (258bp) protein (86aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
hypothetical protein id=12554644 bin=CNBR_ACIDO species=Sphingobium sp. YL23 genus=Sphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
transglycosylase-associated protein
13_1_40cm_4_scaffold_2748_11
unknown

Not on your lists

comp(9167..9358)
DNA (192bp) protein (64aa)

This feature has no annotations

13_1_40cm_4_scaffold_2748_12
unknown

Not on your lists

9477..9677
DNA (201bp) protein (67aa)

This feature has no annotations

13_1_40cm_4_scaffold_2748_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9694..10023)
DNA (330bp) protein (110aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Radical SAM domain protein id=4478783 bin=GWF2_Methylomirabilis_70_14 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
radical SAM protein
13_1_40cm_4_scaffold_2748_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10020..11282)
DNA (1263bp) protein (421aa)
radical SAM domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Radical SAM domain protein id=4472639 bin=GWA2_Methylomirabilis_73_35 species=Nostoc punctiforme genus=Nostoc taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
radical SAM domain-containing protein
13_1_40cm_4_scaffold_2748_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11350..12060
DNA (711bp) protein (237aa)
putative short chain dehydrogenase id=4472638 bin=GWA2_Methylomirabilis_73_35 species=Pseudonocardia sp. P1 genus=Pseudonocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hsd17b10, abad, camr, erab, hadh2, hcd2, hsd10, mhbd, mrpp2, mrx17, mrx31, mrxs10, schad, sdr5c1; hydroxysteroid (17-beta) dehydrogenase 10; K08683 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxy-2-methyl
oxidoreductase
13_1_40cm_4_scaffold_2748_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12426..12698
DNA (273bp) protein (91aa)
Spermidine synthase id=4472637 bin=GWA2_Methylomirabilis_73_35 species=Gallaecimonas xiamenensis genus=Gallaecimonas taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
spermidine synthase-like protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_2748_17
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(12716..12961)
DNA (246bp) protein (82aa)
hypothetical protein id=14627792 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Dehalococcoidia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
13_1_40cm_4_scaffold_2748_18
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(13137..13631)
DNA (495bp) protein (165aa)
DNA polymerase beta domain-containing protein id=14627791 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Dehalococcoidia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
DNA polymerase beta domain-containing protein Tax=CSP1_6_Rokubacteria
regulatory protein ArsR
13_1_40cm_4_scaffold_2748_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14077..15756)
DNA (1680bp) protein (560aa)
ABC transporter related protein id=4478788 bin=GWF2_Methylomirabilis_70_14 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
heme ABC transporter ATP-binding protein
13_1_40cm_4_scaffold_2748_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15756..16199)
DNA (444bp) protein (148aa)
CoA-binding domain protein id=4472625 bin=GWA2_Methylomirabilis_73_35 species=Marinithermus hydrothermalis genus=Marinithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
CoA-binding domain-containing protein; K06929 Tax=GWA2_Rokubacteria_73_35_curated
CoA-binding domain-containing protein
13_1_40cm_4_scaffold_2748_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16216..17211)
DNA (996bp) protein (332aa)
3'-5' exonuclease; K03684 ribonuclease D [EC:3.1.13.5] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
3'-5' exonuclease id=4472621 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribonuclease D
13_1_40cm_4_scaffold_2748_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17346..18152)
DNA (807bp) protein (269aa)
short-chain dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Short-chain dehydrogenase/reductase SDR id=4472514 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short-chain dehydrogenase/reductase SDR
13_1_40cm_4_scaffold_2748_23
Blastopirellula marina, Blastopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(18176..18547)
DNA (372bp) protein (124aa)
PAS sensor signal transduction histidine kinase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZNQ2_9PLAN
PAS sensor signal transduction histidine kinase {ECO:0000313|EMBL:EAQ81950.1}; TaxID=314230 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Blastopirellula.;" s
PAS sensor protein
13_1_40cm_4_scaffold_2748_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18565..19461)
DNA (897bp) protein (299aa)
Nucleotidyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Nucleotidyl transferase id=14626204 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
nucleotidyl transferase
13_1_40cm_4_scaffold_2748_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19643..21388)
DNA (1746bp) protein (582aa)
dehydratase/racemase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative dehydratase/racemase id=4472498 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dehydratase/racemase
13_1_40cm_4_scaffold_2748_26
R_Rhodospirillales_65_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22016..22354)
DNA (339bp) protein (113aa)
Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
13_1_40cm_4_scaffold_2748_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

23009..23707
DNA (699bp) protein (233aa)
methionine synthase; K00548 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] Tax=GWA2_Rokubacteria_73_35_curated
Methionine synthase id=4620328 bin=GWF2_Methylomirabilis_70_14 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
metH; 5-methyltetrahydrofolate--homocysteine methyltransferase
Displaying 27 items

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