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13_1_40cm_4_scaffold_2888

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2888_1
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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1..1494
DNA (1494bp) protein (498aa)
Secreted protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJ81_9GAMM
periplasmic component of the Tol biopolymer transport system Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
periplasmic component of the Tol biopolymer transport system
13_1_40cm_4_scaffold_2888_2
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

1643..2803
DNA (1161bp) protein (387aa)
Cellulose biosynthesis (CelD)-like protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HDL7_ANADF
cellulose biosynthesis (CelD)-like protein
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
13_1_40cm_4_scaffold_2888_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(2813..4501)
DNA (1689bp) protein (563aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA78_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_4_scaffold_2888_4
Desulfotomaculum gibsoniae, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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4585..6153
DNA (1569bp) protein (523aa)
Benzoate-CoA ligase family n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4KMS4_9FIRM
benzoate-CoA ligase family
Benzoate-CoA ligase family {ECO:0000313|EMBL:AGL00931.1}; TaxID=767817 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum gibsoniae
13_1_40cm_4_scaffold_2888_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(6281..7036)
DNA (756bp) protein (252aa)
CAAX amino terminal protease family n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2S6C3_SALRD
Abortive infection protein
Abortive infection protein {ECO:0000313|EMBL:AHG91541.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_2888_6
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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7188..8291
DNA (1104bp) protein (368aa)
peptidase S58 DmpA
Peptidase S58 DmpA {ECO:0000313|EMBL:AHG88566.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Peptidase S58 DmpA id=3113877 bin=GWA2_Ignavibacteria_55_11 species=Fibrisoma limi genus=Fibrisoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
13_1_40cm_4_scaffold_2888_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8549..9355
DNA (807bp) protein (269aa)
Rieske (2Fe-2S) domain-containing protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1F2_9GAMM
Rieske (2Fe-2S) domain-containing protein {ECO:0000313|EMBL:EIL93293.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" sourc
(2Fe-2S)-binding protein
13_1_40cm_4_scaffold_2888_8
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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9355..10704
DNA (1350bp) protein (450aa)
Amino acid/polyamine/organocation transporter, APC superfamily id=3948639 bin=GWF2_Melioribacter_38_21 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
amino acid transporter Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
amino acid permease
13_1_40cm_4_scaffold_2888_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(10710..13160)
DNA (2451bp) protein (817aa)
peptidase M1 membrane alanine aminopeptidase; K01256 aminopeptidase N [EC:3.4.11.2] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Membrane alanyl aminopeptidase id=1250356 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
peptidase M1 membrane alanine aminopeptidase
13_1_40cm_4_scaffold_2888_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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13243..13887
DNA (645bp) protein (215aa)
DinB-like domain protein
DinB-like domain protein {ECO:0000313|EMBL:AHG88849.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_2888_11
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(13732..15321)
DNA (1590bp) protein (530aa)
amine oxidase n=1 Tax=Zavarzinella formosa RepID=UPI0002D46AAC
FAD dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:ABS27675.1}; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter
13_1_40cm_4_scaffold_2888_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

15390..15818
DNA (429bp) protein (143aa)
Uncharacterized protein {ECO:0000313|EMBL:AHG87628.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_2888_13
Caenorhabditis japonica, Caenorhabditis, Rhabditida, Chromadorea, Nematoda, Metazoa

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comp(15815..16927)
DNA (1113bp) protein (371aa)
Uncharacterized protein (Fragment) n=1 Tax=Mycobacterium bovis AN5 RepID=V2W0U1_MYCBI
PE-PGRS family protein PE_PGRS7
Uncharacterized protein {ECO:0000313|EnsemblMetazoa:CJA08452}; TaxID=281687 species="Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhab
13_1_40cm_4_scaffold_2888_14
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(16924..17322)
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Nafulsella turpanensis RepID=UPI00036C731A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKD05037.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
13_1_40cm_4_scaffold_2888_15
RBG_19FT_COMBO_Nitrospirae_42_15_curated, Nitrospirae, Bacteria

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17353..17889
DNA (537bp) protein (179aa)
Sulfur oxidation protein SoxY n=1 Tax=Caenispirillum salinarum AK4 RepID=K9HEN3_9PROT
sulfur oxidation protein SoxY Tax=RBG_19FT_COMBO_Nitrospirae_42_15_curated
sulfur oxidation protein SoxY
13_1_40cm_4_scaffold_2888_16
Magnetococcus marinus, Magnetococcus, Magnetococcales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17891..18226
DNA (336bp) protein (112aa)
Sulfur compound chelating protein SoxZ n=1 Tax=Magnetococcus sp. (strain MC-1) RepID=A0L8X2_MAGSM
hypothetical protein
Sulfur compound chelating protein SoxZ {ECO:0000313|EMBL:ABK44415.1}; TaxID=156889 species="Bacteria; Proteobacteria; Alphaproteobacteria; Magnetococcales; Magnetococcaceae; Magnetococcus.;" source="M
13_1_40cm_4_scaffold_2888_17
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18235..19182
DNA (948bp) protein (316aa)
Beta-lactamase domain protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y6J6_LEPCP
beta-lactamase domain-containing protein
Beta-lactamase domain protein {ECO:0000313|EMBL:ACB36024.1}; Flags: Precursor;; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix ch
13_1_40cm_4_scaffold_2888_18
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19182..20054
DNA (873bp) protein (291aa)
rhodanese domain-containing protein; K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
rhodanese domain-containing protein; K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] id=24536495 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
rhodanese domain-containing protein
13_1_40cm_4_scaffold_2888_19
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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20061..20726
DNA (666bp) protein (222aa)
class IV aminotransferase; K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Aminotransferase, class IV n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AY00_RUBXD id=5223707 bin=16ft_combo_ws3_JS1 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
4-amino-4-deoxychorismate lyase
13_1_40cm_4_scaffold_2888_trna_1
unknown

Not on your lists

20750..20823
DNA (74bp)
transferRNA
13_1_40cm_4_scaffold_2888_20
Segniliparus rugosus, Segniliparus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20915..21532)
DNA (618bp) protein (206aa)
SAM-dependent methlyltransferase n=1 Tax=Thioalkalivibrio sp. AKL11 RepID=UPI00037062E1
Uncharacterized protein {ECO:0000313|EMBL:EFV13510.1}; TaxID=679197 species="Bacteria; Actinobacteria; Corynebacteriales; Segniliparaceae; Segniliparus.;" source="Segniliparus rugosus ATCC BAA-974.;"
type 11 methyltransferase
13_1_40cm_4_scaffold_2888_21
CSP1_8_Deltaproteobacteria, 43F-1404R, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22346..23035)
DNA (690bp) protein (230aa)
hemolysin III family channel protein; K11068 hemolysin III id=14624112 bin=bin5_DeltaP species=Desulfurispirillum indicum genus=Desulfurispirillum taxon_order=Chrysiogenales taxon_class=Chrysiogenetes phylum=Chrysiogenetes tax=bin5_DeltaP organism_group=Deltaproteobacteria
hemolysin III family channel protein; K11068 hemolysin III Tax=CSP1_8_Deltaproteobacteria
hemolysin III family channel protein
13_1_40cm_4_scaffold_2888_22
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(23196..23444)
DNA (249bp) protein (83aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
Putative uncharacterized protein id=4979043 bin=GWA2_Ignavibacteria_55_11 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
hypothetical protein
13_1_40cm_4_scaffold_2888_23
S_Thermoanaerobacterales_50_218, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23762..25063)
DNA (1302bp) protein (434aa)
Methyltransferase type 11 n=1 Tax=Mesotoga sp. PhosAc3 RepID=N1JST8_9THEM
Methyltransferase type 11 Tax=S_Thermoanaerobacterales_50_218
methylase
Displaying 24 items

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