ggKbase home page

13_1_40cm_4_scaffold_2939

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2939_1
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(3..1118)
DNA (1116bp) protein (372aa)
Replication-associated recombination protein A n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EKS8_9CHLR
AAA ATPase; K07478 putative ATPase Tax=RBG_16_Chloroflexi_68_14_curated
ATPase central domain-containing protein
13_1_40cm_4_scaffold_2939_2
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1200..1772
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. AKL7 RepID=UPI0003631FD4
Diguanylate cyclase (GGDEF domain) {ECO:0000313|EMBL:EPX60452.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;"
diguanylate cyclase
13_1_40cm_4_scaffold_2939_3
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

1797..2432
DNA (636bp) protein (212aa)
Phosphoglycerate mutase n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CEB0_THET1
phosphoglycerate mutase
Phosphoglycerate mutase {ECO:0000313|EMBL:ACZ41266.1}; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
13_1_40cm_4_scaffold_2939_4
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

2429..3658
DNA (1230bp) protein (410aa)
glycosidase (EC:3.2.1.-); K05350 beta-glucosidase [EC:3.2.1.21] id=24521880 bin=RBG_19FT_COMBO_GAL15_69_19 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
glycoside hydrolase family protein; K05350 beta-glucosidase [EC:3.2.1.21] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
putative glycoside hydrolase
13_1_40cm_4_scaffold_2939_5
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

3732..4190
DNA (459bp) protein (153aa)
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2TVU5_9DELT
hypothetical protein; K02199 cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
dsbE; thiol:disulfide interchange protein DsbE
13_1_40cm_4_scaffold_2939_6
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

4187..4567
DNA (381bp) protein (127aa)
CcmE/CycJ protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TNF4_9CHLR
CcmE/CycJ protein {ECO:0000313|EMBL:EFH87285.1}; Flags: Precursor;; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedon
CcmE/CycJ protein
13_1_40cm_4_scaffold_2939_7
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

4737..6767
DNA (2031bp) protein (677aa)
Cytochrome c assembly protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C3N3_SPHTD
cytochrome c assembly protein
Cytochrome c assembly protein {ECO:0000313|EMBL:ACZ38850.1}; Flags: Precursor;; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteracea
13_1_40cm_4_scaffold_2939_8
unknown

Not on your lists

6764..6868
DNA (105bp) protein (35aa)

This feature has no annotations

13_1_40cm_4_scaffold_2939_9
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6865..7509
DNA (645bp) protein (215aa)
ABC transporter ATP-binding protein n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67RL3_SYMTH
ABC transporter ATP-binding protein
ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAD39680.1}; TaxID=292459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Symbiobacteriaceae; Symbiobacterium.;" source="Symbiobacterium
13_1_40cm_4_scaffold_2939_10
RBG_16_Chloroflexi_56_11_curated, Chloroflexi, Bacteria

Not on your lists

7509..8174
DNA (666bp) protein (222aa)
cytochrome c-type biogenesis protein CcmB; K02194 heme exporter protein B Tax=RBG_16_Chloroflexi_56_11_curated
cytochrome c-type biogenesis protein CcmB; K02194 heme exporter protein B id=14426404 bin=bin1_lowGC species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=bin1_lowGC organism_group=Unknown_CP
cytochrome c-type biogenesis protein CcmB
13_1_40cm_4_scaffold_2939_11
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

8167..8868
DNA (702bp) protein (234aa)
Cytochrome c assembly protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C3M8_SPHTD
cytochrome c assembly protein
Cytochrome c assembly protein {ECO:0000313|EMBL:ACZ38845.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;"
13_1_40cm_4_scaffold_2939_12
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9092..10156
DNA (1065bp) protein (355aa)
Ferredoxin--NAD(+) reductase {ECO:0000313|EMBL:AEA23066.1}; EC=1.18.1.3 {ECO:0000313|EMBL:AEA23066.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonoc
Ferredoxin--NAD(+) reductase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CQP8_PSEUX
ferredoxin--NAD(+) reductase
13_1_40cm_4_scaffold_2939_13
RIFOXYC1_FULL_Bdellovibrionales_39_130_curated, Bacteroivoracaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(10101..10607)
DNA (507bp) protein (169aa)
NUDIX hydrolase n=1 Tax=Salisaeta longa RepID=UPI0003B39127
NUDIX hydrolase Tax=RIFOXYC1_FULL_Bdellovibrionales_39_130_curated
NUDIX hydrolase
13_1_40cm_4_scaffold_2939_14
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11069..11857)
DNA (789bp) protein (263aa)
Putative metal cation transporter n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XA73_NAKMY
ZIP family zinc transporter {ECO:0000313|EMBL:EWM18832.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
metal cation transporter
13_1_40cm_4_scaffold_2939_15
BJP_IG2069_Chloroflexi_70_12, Chloroflexi, Bacteria

Not on your lists

11880..12572
DNA (693bp) protein (231aa)
Iron (Metal) dependent repressor, DtxR family id=4169028 bin=GWC2_Methylomirabilis_70_16 species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
troR; DtxR family iron (metal) dependent repressor
Tax=BJP_IG2069_Chloroflexi_70_12
13_1_40cm_4_scaffold_2939_16
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(12681..13493)
DNA (813bp) protein (271aa)
Alcohol dehydrogenase zinc-binding domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TX01_ALIDB
alcohol dehydrogenase Tax=RBG_16_Euryarchaeota_68_12_curated
alcohol dehydrogenase
13_1_40cm_4_scaffold_2939_17
Chloroflexus aurantiacus, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

13766..14848
DNA (1083bp) protein (361aa)
Peptidase M23B n=2 Tax=Chloroflexus RepID=A9WJ55_CHLAA
peptidase M23
Peptidase M23B {ECO:0000313|EMBL:ABY34332.1}; Flags: Precursor;; TaxID=324602 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Ch
13_1_40cm_4_scaffold_2939_18
marine actinobacterium MedAcidi-G2A, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14886..17246
DNA (2361bp) protein (787aa)
Uncharacterized protein n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5AMQ1_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KIE50894.1}; TaxID=1550400 species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G2A.;"
hypothetical protein
13_1_40cm_4_scaffold_2939_19
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

17333..18421
DNA (1089bp) protein (363aa)
Alcohol dehydrogenase, zinc-binding protein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AU73_RUBXD
zinc-binding alcohol dehydrogenase
Alcohol dehydrogenase, zinc-binding protein {ECO:0000313|EMBL:ABG05055.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobact
13_1_40cm_4_scaffold_2939_20
Acidithrix ferrooxidans, Acidithrix, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

18421..19998
DNA (1578bp) protein (526aa)
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI00036737D9
Uncharacterized protein {ECO:0000313|EMBL:KJF17101.1}; TaxID=1280514 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidithrix.;" source="Acidithrix ferrooxida
hypothetical protein
13_1_40cm_4_scaffold_2939_21
unknown

Not on your lists

19995..20636
DNA (642bp) protein (214aa)

This feature has no annotations

13_1_40cm_4_scaffold_2939_22
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20633..21514
DNA (882bp) protein (294aa)
Phospholipid/glycerol acyltransferase n=1 Tax=Nocardioides sp. CF8 RepID=R7XUI0_9ACTO
Phospholipid/glycerol acyltransferase {ECO:0000313|EMBL:EON23017.1}; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.
phospholipid/glycerol acyltransferase
13_1_40cm_4_scaffold_2939_23
Streptomyces sviceus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21521..21931)
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Streptomyces canus RepID=UPI00037753CC
Putative uncharacterized protein {ECO:0000313|EMBL:EDY60653.1}; TaxID=463191 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sviceus ATCC 2
hypothetical protein
13_1_40cm_4_scaffold_2939_24
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

Not on your lists

21956..22873
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UCD4_MYXSD id=5224704 bin=16ft_combo_ws3_JS1 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_Zixibacteria_43_9_curated
hypothetical protein
13_1_40cm_4_scaffold_2939_25
Desulfovibrio gigas, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22887..23183
DNA (297bp) protein (99aa)
Translation initiation factor IF-1 n=1 Tax=Desulfovibrio gigas DSM 1382 = ATCC 19364 RepID=T2G8M6_DESGI
infA; putative translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1121448 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" so
13_1_40cm_4_scaffold_2939_26
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

23362..23976
DNA (615bp) protein (205aa)
Cyclase family protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C7E6_SPHTD
cyclase family protein
Cyclase family protein {ECO:0000313|EMBL:ACZ39792.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source
13_1_40cm_4_scaffold_2939_27
RBG_13_Chloroflexi_54_8_curated, Chloroflexi, Bacteria

Not on your lists

comp(24073..24357)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TNK3_9CHLR
putative zinc-binding domain-containing protein Tax=RBG_13_Chloroflexi_54_8_curated
hypothetical protein
13_1_40cm_4_scaffold_2939_28
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(24476..26065)
DNA (1590bp) protein (530aa)
Drug resistance transporter, EmrB/QacA subfamily n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CIC9_THET1
putative drug transport protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
EmrB/QacA subfamily drug resistance transporter
13_1_40cm_4_scaffold_2939_29
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26062..26622)
DNA (561bp) protein (187aa)
MarR family transcriptional regulator n=3 Tax=Amycolatopsis mediterranei RepID=D8I476_AMYMU
MarR family transcriptional regulator
MarR family transcriptional regulator {ECO:0000313|EMBL:AEK41769.1}; TaxID=713604 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis medit
13_1_40cm_4_scaffold_2939_30
unknown

Not on your lists

26668..27192
DNA (525bp) protein (175aa)

This feature has no annotations

Displaying items 1-30 of 33 in total

View Taxonomy