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13_1_40cm_4_scaffold_3028

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_3028_1
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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139..519
-----------------
DNA (381bp)
protein (127aa)
Chaperonin, 10 kDa n=1 Tax=uncultured marine bacterium Ant4D5 RepID=Q2PXZ9_9BACT
groES; putative 10 kDa chaperonin Tax=RBG_16_Gemmatimonadetes_66_8_curated
Chaperonin Cpn10
13_1_40cm_4_scaffold_3028_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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523..840
-----------------
DNA (318bp)
protein (106aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_4_scaffold_3028_3
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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949..2130
-----------------
DNA (1182bp)
protein (394aa)
recQ; ATP-dependent DNA helicase RecQ (EC:3.6.1.-)
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:BAH38744.1}; EC=3.6.1.- {ECO:0000313|EMBL:BAH38744.1};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmati
ATP-dependent DNA helicase RecQ n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A934_GEMAT
13_1_40cm_4_scaffold_3028_4
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2256..3536
-----------------
DNA (1281bp)
protein (427aa)
aminotransferase class V protein (EC:2.6.1.45)
Aminotransferase class V {ECO:0000313|EMBL:ACL61852.1}; EC=2.6.1.45 {ECO:0000313|EMBL:ACL61852.1};; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriacea
Aminotransferase class V n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IK67_METNO
13_1_40cm_4_scaffold_3028_5
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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3533..4507
-----------------
DNA (975bp)
protein (325aa)
Malyl-CoA lyase (EC:4.1.3.24)
Malyl-CoA lyase n=1 Tax=Hoeflea sp. 108 RepID=UPI00037681F4
citrate lyase beta subunit Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
13_1_40cm_4_scaffold_3028_6
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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4510..5685
-----------------
DNA (1176bp)
protein (392aa)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558};
sucC; malate--CoA ligase subunit beta (EC:6.2.1.5)
malate--CoA ligase subunit beta n=1 Tax=Methyloversatilis universalis RepID=UPI000374FE81
13_1_40cm_4_scaffold_3028_7
Burkholderia sacchari, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5682..6596
-----------------
DNA (915bp)
protein (305aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=159450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkho
succinyl-CoA synthetase subunit alpha (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit alpha n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SKX0_METPP
13_1_40cm_4_scaffold_3028_8
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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6593..7579
-----------------
DNA (987bp)
protein (329aa)
2-hydroxyacid dehydrogenase n=1 Tax=Methylococcus capsulatus RepID=UPI0002F10899
2-hydroxyacid dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
2-hydroxyacid dehydrogenase
13_1_40cm_4_scaffold_3028_9
Burkholderia phymatum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7576..8400
-----------------
DNA (825bp)
protein (275aa)
phosphoenolpyruvate carboxylase (EC:4.1.1.31)
Phosphoenolpyruvate carboxylase {ECO:0000256|SAAS:SAAS00018769}; EC=4.1.1.31 {ECO:0000256|SAAS:SAAS00018769};; TaxID=391038 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burk
Phosphoenolpyruvate carboxylase n=1 Tax=Burkholderia phymatum (strain DSM 17167 / STM815) RepID=B2JVL2_BURP8
13_1_40cm_4_scaffold_3028_10
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8535..10274
-----------------
DNA (1740bp)
protein (580aa)
Phosphoenolpyruvate carboxylase {ECO:0000256|SAAS:SAAS00018769}; EC=4.1.1.31 {ECO:0000256|SAAS:SAAS00018769};; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylo
Phosphoenolpyruvate carboxylase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UCZ3_METS4
phosphoenolpyruvate carboxylase
13_1_40cm_4_scaffold_3028_11
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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10353..11573
-----------------
DNA (1221bp)
protein (407aa)
acyl-CoA dehydrogenase (EC:1.3.99.-)
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:BAH38743.1}; EC=1.3.99.- {ECO:0000313|EMBL:BAH38743.1};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;"
Acyl-CoA dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A933_GEMAT
13_1_40cm_4_scaffold_3028_12
Moorea producens, Moorea, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(11580..13730)
-----------------
DNA (2151bp)
protein (717aa)
Prolyl oligopeptidase, serine peptidase, MEROPS family S09A n=1 Tax=Moorea producens 3L RepID=F4XIY9_9CYAN
Prolyl oligopeptidase, serine peptidase, MEROPS family S09A {ECO:0000313|EMBL:EGJ35446.1}; TaxID=489825 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Moorea.;" source="Moor
prolyl endopeptidase
13_1_40cm_4_scaffold_3028_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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13964..15481
-----------------
DNA (1518bp)
protein (506aa)
cafA; ribonuclease G (EC:3.1.-.-); K08301 ribonuclease G [EC:3.1.26.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
cafA; ribonuclease G (EC:3.1.-.-)
Ribonuclease G n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A932_GEMAT
13_1_40cm_4_scaffold_3028_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists


15576..15896
-----------------
DNA (321bp)
protein (107aa)
50S ribosomal protein L21 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A931_GEMAT
rplU; 50S ribosomal protein L21; K02888 large subunit ribosomal protein L21 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
50S ribosomal protein L21
13_1_40cm_4_scaffold_3028_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists


15908..16165
-----------------
DNA (258bp)
protein (86aa)
50S ribosomal protein L27; K02899 large subunit ribosomal protein L27 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
50S ribosomal protein L27 id=4831099 bin=GWC2_Nitrospirae_57_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
50S ribosomal protein L27
13_1_40cm_4_scaffold_3028_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(16243..17451)
-----------------
DNA (1209bp)
protein (403aa)
Imidazolonepropionase n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y3F7_9PROT
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:AHG90871.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_3028_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(17448..18881)
-----------------
DNA (1434bp)
protein (478aa)
amidohydrolase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5895F
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:AHG90870.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_3028_18
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(18907..21006)
-----------------
DNA (2100bp)
protein (700aa)
peptidase, m16 (pitrilysin) family (EC:3.4.24.-) Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
peptidase M16 domain-containing protein id=12557819 bin=CNBR_ACIDO species=Brevundimonas subvibrioides genus=Brevundimonas taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
peptidase M16 domain-containing protein
13_1_40cm_4_scaffold_3028_19
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(21003..22361)
-----------------
DNA (1359bp)
protein (453aa)
Peptidase M16 domain protein n=1 Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) RepID=B3QYA3_CHLT3
Predicted Zn-dependent peptidase {ECO:0000313|EMBL:CDM66642.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
peptidase M16 domain protein
13_1_40cm_4_scaffold_3028_20
unknown

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comp(22370..23134)
-----------------
DNA (765bp)
protein (255aa)

This feature has no annotations

13_1_40cm_4_scaffold_3028_21
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(23103..23966)
-----------------
DNA (864bp)
protein (288aa)
amidohydrolase; K07045 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
amidohydrolase 2
amidohydrolase; K07045 id=1247849 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
13_1_40cm_4_scaffold_3028_22
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(23976..25832)
-----------------
DNA (1857bp)
protein (619aa)
3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157); K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] Tax=RBG_16_Gemmatimonadetes_66_8_curated
3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157)
3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LTX8_HALO1
13_1_40cm_4_scaffold_3028_23
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(25829..26524)
-----------------
DNA (696bp)
protein (232aa)
glycerophosphoryl diester phosphodiesterase family protein; K01126 glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Glycerophosphoryl diester phosphodiesterase family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A928_GEMAT
glycerophosphoryl diester phosphodiesterase family protein
13_1_40cm_4_scaffold_3028_24
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(26521..27195)
-----------------
DNA (675bp)
protein (225aa)
PhaF protein; K15512 benzoyl-CoA 2,3-dioxygenase component B [EC:1.14.12.21] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Benzoyl-CoA oxygenase component B id=1975393 bin=GWD2_Deltaproteobacteria_55_8 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
benzoyl-CoA oxygenase component B
Displaying 24 items

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