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13_1_40cm_4_scaffold_2979

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2979_1
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

313..756
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B79580
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB95726.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica s
13_1_40cm_4_scaffold_2979_2
unknown

Not on your lists

1066..1197
DNA (132bp) protein (44aa)

This feature has no annotations

13_1_40cm_4_scaffold_2979_3
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

1420..1983
DNA (564bp) protein (188aa)
Rhs family protein n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S024_9BURK
Teneurin-3 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
hypothetical protein
13_1_40cm_4_scaffold_2979_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2031..3065)
DNA (1035bp) protein (345aa)
type II secretion system protein E; K02652 type IV pilus assembly protein PilB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Type IV-A pilus assembly ATPase PilB id=3773045 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
type IV pilus assembly protein PilB
13_1_40cm_4_scaffold_2979_5
unknown

Not on your lists

comp(4002..4382)
DNA (381bp) protein (127aa)

This feature has no annotations

13_1_40cm_4_scaffold_2979_6
unknown

Not on your lists

comp(4383..4490)
DNA (108bp) protein (36aa)

This feature has no annotations

13_1_40cm_4_scaffold_2979_7
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(4501..5430)
DNA (930bp) protein (310aa)
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
13_1_40cm_4_scaffold_2979_8
unknown

Not on your lists

comp(6193..6471)
DNA (279bp) protein (93aa)

This feature has no annotations

13_1_40cm_4_scaffold_2979_9
unknown

Not on your lists

6505..6777
DNA (273bp) protein (91aa)

This feature has no annotations

13_1_40cm_4_scaffold_2979_10
Streptomyces griseocarneus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6852..7832)
DNA (981bp) protein (327aa)
RNA polymerase sigma factor n=1 Tax=Streptomyces griseocarneus RepID=Q06384_9ACTO
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=51201 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces griseocarneus.;"
RNA polymerase sigma factor WhiG
13_1_40cm_4_scaffold_2979_11
Pseudomonas chlororaphis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7845..8828)
DNA (984bp) protein (328aa)
Flagellar biosynthesis protein, initiation of hook assembly n=1 Tax=Pseudomonas fluorescens (strain Pf0-1) RepID=Q3K8B8_PSEPF
Flagellar basal body rod modification protein FlgD {ECO:0000313|EMBL:KHA69929.1}; TaxID=587753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;"
flgD; flagellar basal body rod modification protein
13_1_40cm_4_scaffold_2979_12
unknown

Not on your lists

comp(8825..9088)
DNA (264bp) protein (88aa)

This feature has no annotations

13_1_40cm_4_scaffold_2979_13
unknown

Not on your lists

comp(9085..9498)
DNA (414bp) protein (138aa)

This feature has no annotations

13_1_40cm_4_scaffold_2979_14
Dethiosulfovibrio peptidovorans, Dethiosulfovibrio, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

comp(9495..10808)
DNA (1314bp) protein (438aa)
ATPase, FliI/YscN family {ECO:0000313|EMBL:EFC90325.1}; EC=3.6.3.14 {ECO:0000313|EMBL:EFC90325.1};; TaxID=469381 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Dethiosul
fliI; flagellum-specific ATP synthase (EC:3.6.3.14)
ATPase, FliI/YscN family n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=D2Z3L9_9BACT
13_1_40cm_4_scaffold_2979_15
unknown

Not on your lists

comp(10805..10969)
DNA (165bp) protein (55aa)

This feature has no annotations

13_1_40cm_4_scaffold_2979_16
CG_Delta_02, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11078..12379)
DNA (1302bp) protein (434aa)
fleR; sigma-54 dependent response regulator FleR; K10943 two component system, response regulator FlrC Tax=CG_Delta_02
Two component, sigma54 specific, transcriptional regulator, Fis family id=4322678 bin=GWC2_Methylomirabilis_70_16 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Fis family transcriptional regulator
13_1_40cm_4_scaffold_2979_17
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(12376..13137)
DNA (762bp) protein (254aa)
sensor histidine kinase; K07709 two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3] Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Sensor protein (EC:2.7.13.3)
hypothetical protein, partial n=1 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI000380C9DB
13_1_40cm_4_scaffold_2979_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(13134..13502)
DNA (369bp) protein (123aa)
response regulator receiver protein
Response regulator receiver protein id=4347228 bin=GWC2_Methylomirabilis_70_24 species=Helicobacter bilis genus=Helicobacter taxon_order=Campylobacterales taxon_class=Epsilonproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
response regulator receiver protein; K03413 two-component system, chemotaxis family, response regulator CheY Tax=GWA2_Rokubacteria_70_23_curated
13_1_40cm_4_scaffold_2979_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13499..14779)
DNA (1281bp) protein (427aa)
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
two component, sigma54 specific, Fis family transcriptional regulator id=16874721 bin=RBG_16_Aminicenantes_66_30 tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
acetoacetate metabolism regulatory protein AtoC
13_1_40cm_4_scaffold_2979_20
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(14999..15652)
DNA (654bp) protein (218aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative uncharacterized protein id=4205768 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_2979_21
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(16165..17697)
DNA (1533bp) protein (511aa)
cheR; chemotaxis protein methyltransferase (EC:2.1.1.80) Tax=GWA2_Rokubacteria_70_23_curated
cheR; chemotaxis protein methyltransferase (EC:2.1.1.80)
Chemotaxis protein methyltransferase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MGK0_9BACT
13_1_40cm_4_scaffold_2979_22
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(17697..19301)
DNA (1605bp) protein (535aa)
CheA signal transduction histidine kinase; K03407 two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] Tax=GWA2_Rokubacteria_70_23_curated
Chemotaxis protein histidine kinase CheA id=4764263 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
chemotaxis protein CheA
13_1_40cm_4_scaffold_2979_23
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

19445..20311
DNA (867bp) protein (289aa)
Chemotaxis protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MGE1_9BACT
Flagellar motor stator protein MotA {ECO:0000313|EMBL:CDM65634.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
chemotaxis protein
13_1_40cm_4_scaffold_2979_24
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

20308..20937
DNA (630bp) protein (210aa)
Outer membrane protein, OmpA/MotB family id=4347231 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
outer membrane protein, OmpA/MotB family Tax=GWA2_Rokubacteria_70_23_curated
motB; flagellar motor protein MotB
13_1_40cm_4_scaffold_2979_25
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

20919..21746
DNA (828bp) protein (276aa)
Flagellin domain protein n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MGE6_RHOM4
flagellin domain-containing protein
Flagellin domain protein {ECO:0000313|EMBL:ACY47702.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus mar
13_1_40cm_4_scaffold_2979_26
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21760..21987
DNA (228bp) protein (76aa)
Putative two-component system response regulator n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3KRE9_RHISN
two-component system response regulator
Putative two-component system response regulator {ECO:0000313|EMBL:ACP22657.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group
13_1_40cm_4_scaffold_2979_27
unknown

Not on your lists

22041..22394
DNA (354bp) protein (118aa)

This feature has no annotations

13_1_40cm_4_scaffold_2979_28
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

comp(22415..23557)
DNA (1143bp) protein (381aa)
Putative uncharacterized protein id=4761815 bin=GWA2_Elusimicrobia_69_24 species=Planctomyces maris genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
G-D-S-L family lipolytic protein Tax=GWA2_Elusimicrobia_69_24_curated
hypothetical protein
13_1_40cm_4_scaffold_2979_29
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

comp(23599..26676)
DNA (3078bp) protein (1026aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QR08_9CYAN
cusA; heavy metal efflux pump, CzcA family
Heavy metal efflux pump, CzcA family {ECO:0000313|EMBL:AGY60089.1}; TaxID=1183438 species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter kilaueensis JS1.;
13_1_40cm_4_scaffold_2979_30
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(27058..30042)
DNA (2985bp) protein (995aa)
Heavy metal efflux pump (Cobalt-zinc-cadmium) n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LL11_CHLTF
Heavy metal efflux pump (Cobalt-zinc-cadmium) {ECO:0000313|EMBL:AEP13366.1}; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacter
heavy metal efflux pump (cobalt-zinc-cadmium)
Displaying items 1-30 of 32 in total

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