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13_1_40cm_4_scaffold_3160

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_3160_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(2..748)
DNA (747bp) protein (249aa)
iscS; cysteine desulfurase (EC:2.8.1.7); K04487 cysteine desulfurase [EC:2.8.1.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Cysteine desulfurase id=3714107 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cysteine desulfurase IscS
13_1_40cm_4_scaffold_3160_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(920..1351)
DNA (432bp) protein (144aa)
putative transcription factor IscR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative transcription factor IscR id=14625361 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
putative transcription factor IscR
13_1_40cm_4_scaffold_3160_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1459..2445)
DNA (987bp) protein (329aa)
galactose-1-phosphate uridylyltransferase; K00965 UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Galactose-1-phosphate uridylyltransferase id=3714124 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
galactose-1-phosphate uridylyltransferase
13_1_40cm_4_scaffold_3160_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(2454..3797)
DNA (1344bp) protein (448aa)
peptidase S1 and S6 chymotrypsin/Hap; K12600 superkiller protein 3 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Uncharacterized protein id=3735767 bin=GWC2_Methylomirabilis_70_16 species=Nitrosospira sp. APG3 genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_3160_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3790..8175)
DNA (4386bp) protein (1462aa)
chloride channel Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Conserved putative chloride channel id=3887967 bin=GWC2_Methylomirabilis_70_24 species=Syntrophomonas wolfei genus=Syntrophomonas taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
chloride channel
13_1_40cm_4_scaffold_3160_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(8172..9062)
DNA (891bp) protein (297aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative uncharacterized protein id=3887908 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_40cm_4_scaffold_3160_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9066..10511)
DNA (1446bp) protein (482aa)
id=3287913 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=14626574 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_3160_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10508..11521)
DNA (1014bp) protein (338aa)
MoxR-like ATPases (EC:3.6.3.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
MoxR-like ATPases (EC:3.6.3.-) id=14626575 bin=bin7_NC10_sister species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin7_NC10_sister organism_group=NC10
MoxR-like ATPases (EC:3.6.3.-)
13_1_40cm_4_scaffold_3160_9
unknown

Not on your lists

11581..12057
DNA (477bp) protein (159aa)

This feature has no annotations

13_1_40cm_4_scaffold_3160_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12135..13181)
DNA (1047bp) protein (349aa)
Glycosyl transferase, group 1 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase, group 1 id=14626576 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Glycosyl transferase, group 1
13_1_40cm_4_scaffold_3160_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

13267..13554
DNA (288bp) protein (96aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=3735761 bin=GWC2_Methylomirabilis_70_16 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_3160_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13575..13958
DNA (384bp) protein (128aa)
Putative Thioredoxin (H-type,TRX-H) n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EH44_BRASB
Thiol-disulfide isomerase {ECO:0000313|EMBL:EYR77593.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
thioredoxin (H-type,TRX-H)
13_1_40cm_4_scaffold_3160_13
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13963..14673
DNA (711bp) protein (237aa)
Cytochrome c biogenesis protein transmembrane region n=1 Tax=Afipia sp. 1NLS2 RepID=D6V471_9BRAD
Cytochrome c biogenesis protein transmembrane region {ECO:0000313|EMBL:EFI52751.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" sourc
cytochrome c biogenesis protein transmembrane region
13_1_40cm_4_scaffold_3160_14
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14746..15033)
DNA (288bp) protein (96aa)
Conserved hypothetical secreted protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K1L6_AZOSB
hypothetical protein
Conserved hypothetical secreted protein {ECO:0000313|EMBL:CAL92721.1}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp
13_1_40cm_4_scaffold_3160_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15005..15808)
DNA (804bp) protein (268aa)
Transglutaminase domain-containing protein n=1 Tax=Azoarcus sp. KH32C RepID=H0Q0Y1_9RHOO
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
transglutaminase domain-containing protein
13_1_40cm_4_scaffold_3160_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(15923..16921)
DNA (999bp) protein (333aa)
selenide, water dikinase; K01008 selenide, water dikinase [EC:2.7.9.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Selenide, water dikinase id=3666477 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
selenide, water dikinase
13_1_40cm_4_scaffold_3160_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17004..17909)
DNA (906bp) protein (302aa)
Transcriptional regulator, LysR family id=3666476 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
LysR family transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
LysR family transcriptional regulator
13_1_40cm_4_scaffold_3160_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(18409..19560)
DNA (1152bp) protein (384aa)
dcd; 2'-deoxycytidine 5'-triphosphate deaminase (EC:3.5.4.13); K01494 dCTP deaminase [EC:3.5.4.13] Tax=GWA2_Rokubacteria_73_35_curated
dcd; 2'-deoxycytidine 5'-triphosphate deaminase (EC:3.5.4.13)
2'-deoxycytidine 5'-triphosphate deaminase id=3666475 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_3160_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19557..20477)
DNA (921bp) protein (307aa)
homoserine kinase; K00872 homoserine kinase [EC:2.7.1.39] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Homoserine kinase id=3666474 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
homoserine kinase
13_1_40cm_4_scaffold_3160_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(20488..21225)
DNA (738bp) protein (246aa)
ccdA; cytochrome c biogenesis protein CcdA Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Cytochrome c biogenesis protein CcdA id=3666473 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ccdA; cytochrome c biogenesis protein CcdA
13_1_40cm_4_scaffold_3160_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21228..21869)
DNA (642bp) protein (214aa)
resA; thiol-disulfide oxidoreductase ResA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Thiol-disulfide oxidoreductase id=3666472 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
resA; thiol-disulfide oxidoreductase ResA
13_1_40cm_4_scaffold_3160_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21901..23007
DNA (1107bp) protein (369aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Type III effector Hrp-dependent outers id=3666471 bin=GWA2_Methylomirabilis_73_35 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Hrp-dependent type III effector protein
13_1_40cm_4_scaffold_3160_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23004..23828
DNA (825bp) protein (275aa)
4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262); K00097 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262)
4-hydroxythreonine-4-phosphate dehydrogenase id=3666470 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_3160_24
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24291..25745
DNA (1455bp) protein (485aa)
Peptide ABC transporter substrate-binding protein id=4797023 bin=GWC2_Methylomirabilis_70_16 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
peptide ABC transporter substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
peptide ABC transporter substrate-binding protein
13_1_40cm_4_scaffold_3160_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

25792..26751
DNA (960bp) protein (320aa)
Oligopeptide ABC transporter substrate-binding protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JBJ2_9PROT
binding-protein-dependent transport system inner membrane protein; K02033 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
binding-protein-dependent transport system inner membrane protein
13_1_40cm_4_scaffold_3160_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

26755..27699
DNA (945bp) protein (315aa)
oppC; peptide ABC transporter membrane protein (EC:3.6.3.24)
Peptide ABC transporter membrane protein id=4905398 bin=GWA2_Methylomirabilis_73_35 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptide ABC transporter permease; K02034 peptide/nickel transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_3160_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

27749..29164
DNA (1416bp) protein (472aa)
amidase; K01426 amidase [EC:3.5.1.4] Tax=GWA2_Rokubacteria_73_35_curated
amidase (EC:3.5.1.4)
Amidase id=4905367 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_3160_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(29635..30927)
DNA (1293bp) protein (431aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2KKZ2_9PROT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_4_scaffold_3160_29
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(30929..31741)
DNA (813bp) protein (271aa)
hypothetical protein; K07019 Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein; K07019 id=14626593 bin=bin7_NC10_sister species=Azoarcus sp. genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
alpha/beta hydrolase fold protein
13_1_40cm_4_scaffold_3160_30
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(31924..32151)
DNA (228bp) protein (76aa)
hypothetical protein id=14626594 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
hypothetical protein
Displaying items 1-30 of 32 in total

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